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BioLiP
Download all results in tab-seperated text for 102 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6z6j:C5 (3.4) BS01 rna ? GO:0002182 ... Q3E772 32687489
    2 6z6j:C5 (3.4) BS02 rna ? GO:0002182 ... Q3E772 32687489
    3 6z6j:LA (3.4) BS01 rna ? GO:0002181 ... P0CX45 32687489
    4 6z6j:LA (3.4) BS02 rna ? GO:0002181 ... P0CX45 32687489
    5 6z6j:LB (3.4) BS01 rna ? GO:0000027 ... P14126 32687489
    6 6z6j:LC (3.4) BS01 rna ? GO:0002181 ... P10664 32687489
    7 6z6j:LC (3.4) BS02 rna ? GO:0002181 ... P10664 32687489
    8 6z6j:LD (3.4) BS01 rna ? GO:0000027 ... P26321 32687489
    9 6z6j:LD (3.4) BS02 rna ? GO:0000027 ... P26321 32687489
    10 6z6j:LE (3.4) BS01 rna ? GO:0000027 ... Q02326 32687489
    11 6z6j:LF (3.4) BS01 rna ? GO:0000463 ... P05737 32687489
    12 6z6j:LF (3.4) BS02 rna ? GO:0000463 ... P05737 32687489
    13 6z6j:LG (3.4) BS01 rna ? GO:0000470 ... P17076 32687489
    14 6z6j:LG (3.4) BS02 rna ? GO:0000470 ... P17076 32687489
    15 6z6j:LH (3.4) BS01 rna ? GO:0002181 ... P05738 32687489
    16 6z6j:LI (3.4) BS01 rna ? GO:0000027 ... P41805 32687489
    17 6z6j:LI (3.4) BS02 rna ? GO:0000027 ... P41805 32687489
    18 6z6j:LJ (3.4) BS01 rna ? GO:0000027 ... P0C0W9 32687489
    19 6z6j:LJ (3.4) BS02 rna ? GO:0000027 ... P0C0W9 32687489
    20 6z6j:LL (3.4) BS01 rna ? GO:0002181 ... Q12690 32687489
    21 6z6j:LL (3.4) BS02 rna ? GO:0002181 ... Q12690 32687489
    22 6z6j:LM (3.4) BS01 rna ? GO:0000027 ... P36105 32687489
    23 6z6j:LN (3.4) BS01 rna ? GO:0002181 ... P05748 32687489
    24 6z6j:LN (3.4) BS02 rna ? GO:0002181 ... P05748 32687489
    25 6z6j:LO (3.4) BS01 rna ? GO:0000470 ... P26784 32687489
    26 6z6j:LP (3.4) BS01 rna ? GO:0000448 ... P05740 32687489
    27 6z6j:LP (3.4) BS02 rna ? GO:0000448 ... P05740 32687489
    28 6z6j:LQ (3.4) BS01 rna ? GO:0002181 ... P0CX49 32687489
    29 6z6j:LR (3.4) BS01 rna ? GO:0002181 ... P0CX82 32687489
    30 6z6j:LS (3.4) BS01 rna ? GO:0002181 ... P0CX23 32687489
    31 6z6j:LS (3.4) BS02 rna ? GO:0002181 ... P0CX23 32687489
    32 6z6j:LT (3.4) BS01 rna ? GO:0002181 ... Q02753 32687489
    33 6z6j:LT (3.4) BS02 rna ? GO:0002181 ... Q02753 32687489
    34 6z6j:LU (3.4) BS01 rna ? GO:0002181 ... P05749 32687489
    35 6z6j:LV (3.4) BS01 rna ? GO:0002181 ... P0CX41 32687489
    36 6z6j:LW (3.4) BS01 rna ? GO:0002181 ... P04449 32687489
    37 6z6j:LX (3.4) BS01 rna ? GO:0000027 ... P04456 32687489
    38 6z6j:LX (3.4) BS02 rna ? GO:0000027 ... P04456 32687489
    39 6z6j:LY (3.4) BS01 rna ? GO:0002181 ... P05743 32687489
    40 6z6j:LY (3.4) BS02 rna ? GO:0002181 ... P05743 32687489
    41 6z6j:LZ (3.4) BS01 rna ? GO:0002181 ... P0C2H6 32687489
    42 6z6j:La (3.4) BS01 rna ? GO:0002181 ... P02406 32687489
    43 6z6j:Lb (3.4) BS01 rna ? GO:0002181 ... P05747 32687489
    44 6z6j:Lc (3.4) BS01 rna ? GO:0002181 ... P14120 32687489
    45 6z6j:Ld (3.4) BS01 rna ? GO:0002181 ... P0C2H8 32687489
    46 6z6j:Le (3.4) BS01 rna ? GO:0002181 ... P38061 32687489
    47 6z6j:Lf (3.4) BS01 rna ? GO:0000027 ... P05744 32687489
    48 6z6j:Lg (3.4) BS01 rna ? GO:0002181 ... P87262 32687489
    49 6z6j:Lg (3.4) BS02 ZN ? GO:0002181 ... P87262 32687489
    50 6z6j:Lh (3.4) BS01 rna ? GO:0000463 ... P0CX84 32687489
    51 6z6j:Lh (3.4) BS02 rna ? GO:0000463 ... P0CX84 32687489
    52 6z6j:Li (3.4) BS01 rna ? GO:0002181 ... P05745 32687489
    53 6z6j:Lj (3.4) BS01 rna ? GO:0000448 ... P49166 32687489
    54 6z6j:Lj (3.4) BS02 rna ? GO:0000448 ... P49166 32687489
    55 6z6j:Lj (3.4) BS03 ZN ? GO:0000448 ... P49166 32687489
    56 6z6j:Lk (3.4) BS01 rna ? GO:0002181 ... P49167 32687489
    57 6z6j:Ll (3.4) BS01 rna ? GO:0002181 ... P04650 32687489
    58 6z6j:Ll (3.4) BS02 rna ? GO:0002181 ... P04650 32687489
    59 6z6j:Lm (3.4) BS01 rna ? GO:0000027 ... P0CH08 32687489
    60 6z6j:Lm (3.4) BS02 ZN ? GO:0000027 ... P0CH08 32687489
    61 6z6j:Lo (3.4) BS01 rna ? GO:0002181 ... P0CX27 32687489
    62 6z6j:Lo (3.4) BS02 ZN ? GO:0002181 ... P0CX27 32687489
    63 6z6j:Lp (3.4) BS01 rna ? GO:0002181 ... P0CX25 32687489
    64 6z6j:Lp (3.4) BS02 ZN ? GO:0002181 ... P0CX25 32687489
    65 6z6j:SA (3.4) BS01 rna ? GO:0000028 ... P32905 32687489
    66 6z6j:SB (3.4) BS01 rna ? GO:0000462 ... P33442 32687489
    67 6z6j:SC (3.4) BS01 rna ? GO:0000054 ... P25443 32687489
    68 6z6j:SD (3.4) BS01 rna ? GO:0000054 ... P05750 32687489
    69 6z6j:SE (3.4) BS01 rna ? GO:0002181 ... P0CX35 32687489
    70 6z6j:SF (3.4) BS01 rna ? GO:0000028 ... P26783 32687489
    71 6z6j:SG (3.4) BS01 rna ? GO:0000462 ... P0CX37 32687489
    72 6z6j:SH (3.4) BS01 rna ? GO:0002181 ... P26786 32687489
    73 6z6j:SI (3.4) BS01 rna ? GO:0000462 ... P0CX39 32687489
    74 6z6j:SI (3.4) BS02 rna ? GO:0000462 ... P0CX39 32687489
    75 6z6j:SJ (3.4) BS01 rna ? GO:0000462 ... O13516 32687489
    76 6z6j:SK (3.4) BS01 rna ? GO:0000054 ... Q08745 32687489
    77 6z6j:SL (3.4) BS01 rna ? GO:0000028 ... P0CX47 32687489
    78 6z6j:SM (3.4) BS01 rna ? GO:0000028 ... P48589 32687489
    79 6z6j:SN (3.4) BS01 rna ? GO:0000462 ... P05756 32687489
    80 6z6j:SN (3.4) BS02 rna ? GO:0000462 ... P05756 32687489
    81 6z6j:SO (3.4) BS01 rna ? GO:0000028 ... P06367 32687489
    82 6z6j:SP (3.4) BS01 rna ? GO:0000028 ... Q01855 32687489
    83 6z6j:SQ (3.4) BS01 rna ? GO:0000462 ... P0CX51 32687489
    84 6z6j:SR (3.4) BS01 rna ? GO:0000028 ... P02407 32687489
    85 6z6j:SS (3.4) BS01 rna ? GO:0000054 ... P0CX55 32687489
    86 6z6j:SS (3.4) BS02 rna ? GO:0000054 ... P0CX55 32687489
    87 6z6j:ST (3.4) BS01 rna ? GO:0000028 ... P07280 32687489
    88 6z6j:SU (3.4) BS01 rna ? GO:0000462 ... P38701 32687489
    89 6z6j:SV (3.4) BS01 rna ? GO:0000447 ... P0C0V8 32687489
    90 6z6j:SW (3.4) BS01 rna ? GO:0002181 ... P0C0W1 32687489
    91 6z6j:SX (3.4) BS01 rna ? GO:0000462 ... P0CX29 32687489
    92 6z6j:SY (3.4) BS01 rna ? GO:0000462 ... P0CX31 32687489
    93 6z6j:SZ (3.4) BS01 rna ? GO:0002181 ... Q3E792 32687489
    94 6z6j:Sa (3.4) BS01 rna ? GO:0000054 ... P39939 32687489
    95 6z6j:Sa (3.4) BS02 ZN ? GO:0000054 ... P39939 32687489
    96 6z6j:Sb (3.4) BS01 rna ? GO:0000028 ... P35997 32687489
    97 6z6j:Sb (3.4) BS02 ZN ? GO:0000028 ... P35997 32687489
    98 6z6j:Sc (3.4) BS01 rna ? GO:0000028 ... Q3E7X9 32687489
    99 6z6j:Sd (3.4) BS01 rna ? GO:0002181 ... P41057 32687489
    100 6z6j:Se (3.4) BS01 rna ? GO:0002181 ... P0CX33 32687489
    101 6z6j:Sf (3.4) BS01 rna ? GO:0000028 ... P05759 32687489
    102 6z6j:Sg (3.4) BS01 rna ? GO:0001965 ... P38011 32687489
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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