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BioLiP
Download all results in tab-seperated text for 115 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6z1p:AA (3.7) BS01 rna ? GO:0003735 ... I7M068 32553108
    2 6z1p:AB (3.7) BS01 rna ? GO:0003735 ... I7LU83 32553108
    3 6z1p:AB (3.7) BS02 rna ? GO:0003735 ... I7LU83 32553108
    4 6z1p:AC (3.7) BS01 rna ? GO:0003735 ... Q22W36 32553108
    5 6z1p:AC (3.7) BS02 rna ? GO:0003735 ... Q22W36 32553108
    6 6z1p:AD (3.7) BS01 rna N/A N/A N/A 32553108
    7 6z1p:AE (3.7) BS01 rna ? GO:0003735 ... Q22L35 32553108
    8 6z1p:AF (3.7) BS01 rna ? GO:0003735 ... I7M803 32553108
    9 6z1p:AF (3.7) BS02 rna ? GO:0003735 ... I7M803 32553108
    10 6z1p:AG (3.7) BS01 rna ? GO:0003735 ... W7XH61 32553108
    11 6z1p:AG (3.7) BS02 ZN ? GO:0003735 ... W7XH61 32553108
    12 6z1p:AH (3.7) BS01 rna ? N/A I7LT48 32553108
    13 6z1p:AI (3.7) BS01 rna ? GO:0003735 ... I7MG40 32553108
    14 6z1p:AI (3.7) BS02 rna ? GO:0003735 ... I7MG40 32553108
    15 6z1p:AJ (3.7) BS01 rna ? GO:0003735 ... Q22RG0 32553108
    16 6z1p:AL (3.7) BS01 rna ? GO:0003735 ... I7MAF1 32553108
    17 6z1p:AM (3.7) BS01 rna ? N/A Q22KC0 32553108
    18 6z1p:AN (3.7) BS01 rna ? N/A I7MI39 32553108
    19 6z1p:AO (3.7) BS01 rna ? N/A Q23ZH7 32553108
    20 6z1p:AO (3.7) BS02 rna ? N/A Q23ZH7 32553108
    21 6z1p:AP (3.7) BS01 rna ? N/A I7M3V9 32553108
    22 6z1p:AP (3.7) BS02 rna ? N/A I7M3V9 32553108
    23 6z1p:AQ (3.7) BS01 rna ? N/A W7WYR3 32553108
    24 6z1p:AR (3.7) BS01 rna ? N/A I7MKV5 32553108
    25 6z1p:AS (3.7) BS01 rna ? N/A I7LTP6 32553108
    26 6z1p:AT (3.7) BS01 rna ? GO:0006614 ... W7XFS0 32553108
    27 6z1p:AT (3.7) BS02 rna ? GO:0006614 ... W7XFS0 32553108
    28 6z1p:AU (3.7) BS01 rna ? N/A Q23Q81 32553108
    29 6z1p:AU (3.7) BS02 rna ? N/A Q23Q81 32553108
    30 6z1p:AV (3.7) BS01 rna ? GO:0005737 ... Q22HE3 32553108
    31 6z1p:AV (3.7) BS02 FES ? GO:0005737 ... Q22HE3 32553108
    32 6z1p:AV (3.7) BS03 FES ? GO:0005737 ... Q22HE3 32553108
    33 6z1p:Ac (3.7) BS01 rna ? GO:0003723 ... Q951B6 32553108
    34 6z1p:Ad (3.7) BS01 rna ? GO:0003735 ... Q22HG3 32553108
    35 6z1p:Ad (3.7) BS02 rna ? GO:0003735 ... Q22HG3 32553108
    36 6z1p:Ad (3.7) BS03 rna ? GO:0003735 ... Q22HG3 32553108
    37 6z1p:Ae (3.7) BS01 rna ? GO:0003735 ... I7MGP2 32553108
    38 6z1p:Ae (3.7) BS02 rna ? GO:0003735 ... I7MGP2 32553108
    39 6z1p:Af (3.7) BS01 rna ? GO:0005739 ... Q951A2 32553108
    40 6z1p:Ag (3.7) BS01 rna ? GO:0003735 ... Q951A9 32553108
    41 6z1p:Al (3.7) BS01 rna ? GO:0003735 ... Q24C33 32553108
    42 6z1p:Am (3.7) BS01 rna ? GO:0005739 ... Q951B5 32553108
    43 6z1p:An (3.7) BS01 rna ? GO:0003735 ... W7XH77 32553108
    44 6z1p:Ao (3.7) BS01 rna ? GO:0003729 ... W7X626 32553108
    45 6z1p:Ap (3.7) BS01 rna ? GO:0003735 ... Q950Y1 32553108
    46 6z1p:Ap (3.7) BS02 rna ? GO:0003735 ... Q950Y1 32553108
    47 6z1p:Aq (3.7) BS01 rna ? GO:0003735 ... I7MF78 32553108
    48 6z1p:Aq (3.7) BS02 rna ? GO:0003735 ... I7MF78 32553108
    49 6z1p:Ar (3.7) BS01 rna ? GO:0003735 ... Q951A0 32553108
    50 6z1p:As (3.7) BS01 rna ? GO:0003735 ... A4VE95 32553108
    51 6z1p:At (3.7) BS01 rna ? N/A I7M2I9 32553108
    52 6z1p:At (3.7) BS02 rna ? N/A I7M2I9 32553108
    53 6z1p:Au (3.7) BS01 rna ? GO:0000027 ... Q235I3 32553108
    54 6z1p:Au (3.7) BS02 rna ? GO:0000027 ... Q235I3 32553108
    55 6z1p:Av (3.7) BS01 rna ? GO:0003723 ... I7LVD3 32553108
    56 6z1p:Aw (3.7) BS01 rna ? GO:0003735 ... Q23CT9 32553108
    57 6z1p:Aw (3.7) BS02 rna ? GO:0003735 ... Q23CT9 32553108
    58 6z1p:Ax (3.7) BS01 rna ? GO:0003735 ... Q22EY1 32553108
    59 6z1p:Ax (3.7) BS02 rna ? GO:0003735 ... Q22EY1 32553108
    60 6z1p:Ay (3.7) BS01 rna ? GO:0003723 ... Q24C34 32553108
    61 6z1p:Ay (3.7) BS02 rna ? GO:0003723 ... Q24C34 32553108
    62 6z1p:Az (3.7) BS01 rna ? GO:0006412 ... I7LVZ3 32553108
    63 6z1p:BA (3.7) BS01 rna ? N/A Q23K64 32553108
    64 6z1p:BB (3.7) BS01 rna ? N/A I7MMM6 32553108
    65 6z1p:BC (3.7) BS01 rna N/A N/A N/A 32553108
    66 6z1p:BD (3.7) BS01 rna ? GO:0005739 ... Q22FZ4 32553108
    67 6z1p:BD (3.7) BS02 rna ? GO:0005739 ... Q22FZ4 32553108
    68 6z1p:BE (3.7) BS01 rna ? N/A Q23DN6 32553108
    69 6z1p:BE (3.7) BS02 rna ? N/A Q23DN6 32553108
    70 6z1p:BG (3.7) BS01 rna ? N/A Q24G80 32553108
    71 6z1p:BI (3.7) BS01 rna 3.1.2.4 GO:0003860 ... Q22P47 32553108
    72 6z1p:BI (3.7) BS02 rna 3.1.2.4 GO:0003860 ... Q22P47 32553108
    73 6z1p:BL (3.7) BS01 rna 1.8.4.12 GO:0005737 ... Q22W57 32553108
    74 6z1p:BL (3.7) BS02 ZN 1.8.4.12 GO:0005737 ... Q22W57 32553108
    75 6z1p:BN (3.7) BS01 rna ? N/A Q22GF7 32553108
    76 6z1p:BS (3.7) BS01 rna ? GO:0005886 ... A4VCP7 32553108
    77 6z1p:BU (3.7) BS01 rna ? N/A Q22EB6 32553108
    78 6z1p:BV (3.7) BS01 rna ? N/A Q24HL0 32553108
    79 6z1p:BV (3.7) BS02 rna ? N/A Q24HL0 32553108
    80 6z1p:BX (3.7) BS01 rna ? GO:0005739 ... Q951B8 32553108
    81 6z1p:BY (3.7) BS01 rna ? GO:0003690 ... I7LUK3 32553108
    82 6z1p:Bc (3.7) BS01 rna ? GO:0005739 ... Q950X8 32553108
    83 6z1p:Bd (3.7) BS01 rna ? GO:0005739 ... Q951A8 32553108
    84 6z1p:Be (3.7) BS01 rna ? GO:0005739 ... Q951C0 32553108
    85 6z1p:Be (3.7) BS02 rna ? GO:0005739 ... Q951C0 32553108
    86 6z1p:Bf (3.7) BS01 rna ? GO:0003723 ... I7M4M7 32553108
    87 6z1p:Bf (3.7) BS02 rna ? GO:0003723 ... I7M4M7 32553108
    88 6z1p:Bg (3.7) BS01 rna ? GO:0003735 ... I7MHS2 32553108
    89 6z1p:Bh (3.7) BS01 rna ? GO:0005739 ... Q951A4 32553108
    90 6z1p:Bi (3.7) BS01 rna ? GO:0003723 ... I7M4A2 32553108
    91 6z1p:Bj (3.7) BS01 rna ? GO:0005739 ... Q951A1 32553108
    92 6z1p:Bk (3.7) BS01 rna ? GO:0005739 ... Q950Z8 32553108
    93 6z1p:Bl (3.7) BS01 rna ? GO:0003735 ... Q951B3 32553108
    94 6z1p:Bl (3.7) BS02 rna ? GO:0003735 ... Q951B3 32553108
    95 6z1p:Bm (3.7) BS01 rna ? GO:0003676 ... Q951B9 32553108
    96 6z1p:Bn (3.7) BS01 rna ? GO:0005739 ... Q951B0 32553108
    97 6z1p:Bo (3.7) BS01 rna ? GO:0003735 ... Q22WF3 32553108
    98 6z1p:Bp (3.7) BS01 rna ? GO:0003735 ... I7M3F6 32553108
    99 6z1p:Bp (3.7) BS02 rna ? GO:0003735 ... I7M3F6 32553108
    100 6z1p:Bq (3.7) BS01 rna ? GO:0003735 ... I7M6C7 32553108
    101 6z1p:Bq (3.7) BS02 rna ? GO:0003735 ... I7M6C7 32553108
    102 6z1p:Bq (3.7) BS03 rna ? GO:0003735 ... I7M6C7 32553108
    103 6z1p:Br (3.7) BS01 rna ? GO:0003735 ... Q23K82 32553108
    104 6z1p:Bs (3.7) BS01 rna ? GO:0003735 ... Q951B7 32553108
    105 6z1p:Bt (3.7) BS01 rna ? N/A Q22BA0 32553108
    106 6z1p:Bu (3.7) BS01 rna ? N/A Q23YQ0 32553108
    107 6z1p:Bv (3.7) BS01 rna ? N/A I7M0P0 32553108
    108 6z1p:Bv (3.7) BS02 rna ? N/A I7M0P0 32553108
    109 6z1p:Bw (3.7) BS01 rna ? GO:0003735 ... Q22RT0 32553108
    110 6z1p:Bw (3.7) BS02 ATP ? GO:0003735 ... Q22RT0 32553108
    111 6z1p:Bw (3.7) BS03 MG ? GO:0003735 ... Q22RT0 32553108
    112 6z1p:Bx (3.7) BS01 rna ? N/A Q23UD3 32553108
    113 6z1p:By (3.7) BS01 rna ? N/A I7LW04 32553108
    114 6z1p:Bz (3.7) BS01 rna ? N/A I7LWU8 32553108
    115 6z1p:Bz (3.7) BS02 rna ? N/A I7LWU8 32553108
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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