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BioLiP
Download all results in tab-seperated text for 91 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6ywe:0 (2.99) BS01 rna ? GO:0003735 ... Q7S4E7 33056988
    2 6ywe:0 (2.99) BS02 ZN ? GO:0003735 ... Q7S4E7 33056988
    3 6ywe:1 (2.99) BS01 rna N/A N/A N/A 33056988
    4 6ywe:11 (2.99) BS01 rna N/A GO:0003735 ... N/A 33056988
    5 6ywe:2 (2.99) BS01 rna N/A GO:0003735 ... N/A 33056988
    6 6ywe:2 (2.99) BS02 NAD N/A GO:0003735 ... N/A 33056988
    7 6ywe:22 (2.99) BS01 rna ? GO:0005739 ... Q7SHR6 33056988
    8 6ywe:22 (2.99) BS02 rna ? GO:0005739 ... Q7SHR6 33056988
    9 6ywe:3 (2.99) BS01 rna N/A GO:0003735 ... N/A 33056988
    10 6ywe:33 (2.99) BS01 rna ? N/A Q9HE52 33056988
    11 6ywe:4 (2.99) BS01 rna N/A GO:0003735 ... N/A 33056988
    12 6ywe:44 (2.99) BS01 rna N/A GO:0004784 ... N/A 33056988
    13 6ywe:5 (2.99) BS01 rna N/A GO:0003725 ... N/A 33056988
    14 6ywe:6 (2.99) BS01 rna N/A GO:0003735 ... N/A 33056988
    15 6ywe:66 (2.99) BS01 rna ? GO:0003735 ... Q7SHB2 33056988
    16 6ywe:7 (2.99) BS01 rna ? GO:0003735 ... Q7S518 33056988
    17 6ywe:8 (2.99) BS01 rna ? GO:0005739 ... Q7S711 33056988
    18 6ywe:9 (2.99) BS01 rna N/A GO:0003735 ... N/A 33056988
    19 6ywe:AA (2.99) BS01 rna N/A N/A N/A 33056988
    20 6ywe:B (2.99) BS01 rna N/A GO:0003723 ... N/A 33056988
    21 6ywe:BB (2.99) BS01 rna ? GO:0003735 ... V5ILE0 33056988
    22 6ywe:BB (2.99) BS02 MG ? GO:0003735 ... V5ILE0 33056988
    23 6ywe:C (2.99) BS01 rna ? GO:0003735 ... Q873B3 33056988
    24 6ywe:CC (2.99) BS01 rna ? GO:0005739 ... A0A1W5YJW8 33056988
    25 6ywe:D (2.99) BS01 rna ? GO:0003735 ... V5IMN1 33056988
    26 6ywe:DD (2.99) BS01 rna N/A GO:0003723 ... N/A 33056988
    27 6ywe:E (2.99) BS01 rna ? GO:0003723 ... Q96U12 33056988
    28 6ywe:E (2.99) BS02 NAD ? GO:0003723 ... Q96U12 33056988
    29 6ywe:EE (2.99) BS01 rna ? GO:0003723 ... Q8X048 33056988
    30 6ywe:F (2.99) BS01 rna N/A GO:0003735 ... N/A 33056988
    31 6ywe:FF (2.99) BS01 rna N/A GO:0003735 ... N/A 33056988
    32 6ywe:G (2.99) BS01 rna N/A GO:0003735 ... N/A 33056988
    33 6ywe:GG (2.99) BS01 rna N/A GO:0006412 ... N/A 33056988
    34 6ywe:GG (2.99) BS02 rna N/A GO:0006412 ... N/A 33056988
    35 6ywe:H (2.99) BS01 rna N/A GO:0003735 ... N/A 33056988
    36 6ywe:HH (2.99) BS01 rna N/A GO:0003735 ... N/A 33056988
    37 6ywe:I (2.99) BS01 rna N/A GO:0003735 ... N/A 33056988
    38 6ywe:I (2.99) BS02 rna N/A GO:0003735 ... N/A 33056988
    39 6ywe:II (2.99) BS01 rna N/A GO:0003735 ... N/A 33056988
    40 6ywe:II (2.99) BS02 rna N/A GO:0003735 ... N/A 33056988
    41 6ywe:J (2.99) BS01 rna N/A GO:0003735 ... N/A 33056988
    42 6ywe:JJ (2.99) BS01 rna N/A GO:0003735 ... N/A 33056988
    43 6ywe:K (2.99) BS01 rna ? GO:0003735 ... Q8X081 33056988
    44 6ywe:KK (2.99) BS01 rna N/A GO:0003735 ... N/A 33056988
    45 6ywe:KK (2.99) BS02 rna N/A GO:0003735 ... N/A 33056988
    46 6ywe:L (2.99) BS01 rna N/A GO:0003735 ... N/A 33056988
    47 6ywe:LL (2.99) BS01 rna N/A GO:0003735 ... N/A 33056988
    48 6ywe:M (2.99) BS01 rna N/A GO:0003735 ... N/A 33056988
    49 6ywe:MM (2.99) BS01 rna ? GO:0003676 ... Q6MVY0 33056988
    50 6ywe:N (2.99) BS01 rna ? GO:0003735 ... Q6MVF2 33056988
    51 6ywe:NN (2.99) BS01 rna N/A GO:0003735 ... N/A 33056988
    52 6ywe:O (2.99) BS01 rna ? GO:0003735 ... Q7S5N0 33056988
    53 6ywe:OO (2.99) BS01 rna ? GO:0003735 ... Q8X067 33056988
    54 6ywe:P (2.99) BS01 rna N/A GO:0003735 ... N/A 33056988
    55 6ywe:PP (2.99) BS01 rna N/A GO:0003735 ... N/A 33056988
    56 6ywe:Q (2.99) BS01 rna N/A GO:0003735 ... N/A 33056988
    57 6ywe:QQ (2.99) BS01 rna N/A GO:0003735 ... N/A 33056988
    58 6ywe:R (2.99) BS01 rna ? GO:0003735 ... Q8X0Q2 33056988
    59 6ywe:RR (2.99) BS01 rna ? GO:0003735 ... Q872A7 33056988
    60 6ywe:S (2.99) BS01 rna N/A GO:0003735 ... N/A 33056988
    61 6ywe:S (2.99) BS02 MG N/A GO:0003735 ... N/A 33056988
    62 6ywe:SS (2.99) BS01 rna N/A GO:0003723 ... N/A 33056988
    63 6ywe:SS (2.99) BS02 rna N/A GO:0003723 ... N/A 33056988
    64 6ywe:T (2.99) BS01 rna N/A GO:0003735 ... N/A 33056988
    65 6ywe:TT (2.99) BS01 rna N/A GO:0003735 ... N/A 33056988
    66 6ywe:TT (2.99) BS02 rna N/A GO:0003735 ... N/A 33056988
    67 6ywe:U (2.99) BS01 rna ? GO:0003735 ... Q8X098 33056988
    68 6ywe:UU (2.99) BS01 rna ? GO:0003735 ... Q873E4 33056988
    69 6ywe:V (2.99) BS01 rna ? GO:0003735 ... Q9C2E5 33056988
    70 6ywe:V (2.99) BS02 rna ? GO:0003735 ... Q9C2E5 33056988
    71 6ywe:VV (2.99) BS01 rna ? GO:0005739 ... Q7SHR9 33056988
    72 6ywe:W (2.99) BS01 rna ? GO:0003735 ... Q1K4P1 33056988
    73 6ywe:W (2.99) BS02 ZN ? GO:0003735 ... Q1K4P1 33056988
    74 6ywe:WW (2.99) BS01 rna ? GO:0005739 ... Q7RYW7 33056988
    75 6ywe:X (2.99) BS01 rna N/A GO:0003735 ... N/A 33056988
    76 6ywe:XX (2.99) BS01 rna ? GO:0003735 ... Q7SD06 33056988
    77 6ywe:XX (2.99) BS02 rna ? GO:0003735 ... Q7SD06 33056988
    78 6ywe:XX (2.99) BS03 rna ? GO:0003735 ... Q7SD06 33056988
    79 6ywe:XX (2.99) BS04 ATP ? GO:0003735 ... Q7SD06 33056988
    80 6ywe:Y (2.99) BS01 rna ? GO:0003735 ... Q96U95 33056988
    81 6ywe:YY (2.99) BS01 rna N/A N/A N/A 33056988
    82 6ywe:ZZ (2.99) BS01 rna ? GO:0003735 ... Q9P5J2 33056988
    83 6ywe:a (2.99) BS01 rna ? GO:0003735 ... Q8NIR6 33056988
    84 6ywe:b (2.99) BS01 rna N/A GO:0003735 ... N/A 33056988
    85 6ywe:c (2.99) BS01 rna N/A N/A N/A 33056988
    86 6ywe:d (2.99) BS01 rna N/A GO:0000002 ... N/A 33056988
    87 6ywe:e (2.99) BS01 rna ? GO:0003735 ... Q870V5 33056988
    88 6ywe:f (2.99) BS01 rna ? GO:0003735 ... Q6M9C4 33056988
    89 6ywe:g (2.99) BS01 rna N/A GO:0003735 ... N/A 33056988
    90 6ywe:i (2.99) BS01 rna N/A N/A N/A 33056988
    91 6ywe:j (2.99) BS01 rna ? GO:0003735 ... Q7RWZ7 33056988
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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