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BioLiP
Download all results in tab-seperated text for 34 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6ys3:0 (2.58) BS01 rna ? GO:0000027 ... P0A7M2 N/A
    2 6ys3:1 (2.58) BS01 rna ? GO:0000027 ... P0A7M6 N/A
    3 6ys3:2 (2.58) BS01 rna ? GO:0000027 ... P0AG51 N/A
    4 6ys3:3 (2.58) BS01 rna ? GO:0000027 ... P0A7N4 N/A
    5 6ys3:4 (2.58) BS01 rna ? GO:0000027 ... P0A7N9 N/A
    6 6ys3:6 (2.58) BS01 rna ? GO:0002181 ... P0A7P5 N/A
    7 6ys3:7 (2.58) BS01 rna ? GO:0002181 ... P0A7Q1 N/A
    8 6ys3:8 (2.58) BS01 rna ? GO:0002181 ... P0A7Q6 N/A
    9 6ys3:c (2.58) BS01 rna ? GO:0000027 ... P60422 N/A
    10 6ys3:d (2.58) BS01 rna ? GO:0000027 ... P60438 N/A
    11 6ys3:e (2.58) BS01 rna ? GO:0001070 ... P60723 N/A
    12 6ys3:f (2.58) BS01 rna ? GO:0000027 ... P62399 N/A
    13 6ys3:f (2.58) BS02 rna ? GO:0000027 ... P62399 N/A
    14 6ys3:f (2.58) BS03 rna ? GO:0000027 ... P62399 N/A
    15 6ys3:g (2.58) BS01 rna ? GO:0000027 ... P0AG55 N/A
    16 6ys3:h (2.58) BS01 rna ? GO:0002181 ... P0A7R1 N/A
    17 6ys3:j (2.58) BS01 rna ? GO:0002181 ... P0AA10 N/A
    18 6ys3:k (2.58) BS01 rna ? GO:0002181 ... P0ADY3 N/A
    19 6ys3:l (2.58) BS01 rna ? GO:0002181 ... P02413 N/A
    20 6ys3:m (2.58) BS01 rna ? GO:0000027 ... P0ADY7 N/A
    21 6ys3:m (2.58) BS02 rna ? GO:0000027 ... P0ADY7 N/A
    22 6ys3:n (2.58) BS01 rna ? GO:0000027 ... P0AG44 N/A
    23 6ys3:o (2.58) BS01 rna ? GO:0003735 ... P0ADY7 N/A
    24 6ys3:o (2.58) BS02 rna ? GO:0003735 ... P0ADY7 N/A
    25 6ys3:p (2.58) BS01 rna ? GO:0000027 ... P0A7K6 N/A
    26 6ys3:q (2.58) BS01 rna ? GO:0000027 ... P0A7L3 N/A
    27 6ys3:r (2.58) BS01 rna ? GO:0002181 ... P0AG48 N/A
    28 6ys3:s (2.58) BS01 rna ? GO:0002181 ... P61175 N/A
    29 6ys3:t (2.58) BS01 rna ? GO:0000027 ... P0ADZ0 N/A
    30 6ys3:u (2.58) BS01 rna ? GO:0000027 ... P60624 N/A
    31 6ys3:w (2.58) BS01 rna ? GO:0000027 ... P68919 N/A
    32 6ys3:y (2.58) BS01 rna ? GO:0000027 ... P0A7L8 N/A
    33 6ys3:y (2.58) BS02 rna ? GO:0000027 ... P0A7L8 N/A
    34 6ys3:z (2.58) BS01 rna ? N/A P02526 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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