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BioLiP
Download all results in tab-seperated text for 56 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6ylx:B (3.9) BS01 rna ? GO:0000027 ... P14126 32668200
    2 6ylx:C (3.9) BS01 rna ? GO:0002181 ... P10664 32668200
    3 6ylx:C (3.9) BS02 rna ? GO:0002181 ... P10664 32668200
    4 6ylx:E (3.9) BS01 rna ? GO:0000027 ... Q02326 32668200
    5 6ylx:F (3.9) BS01 rna ? GO:0000463 ... P05737 32668200
    6 6ylx:G (3.9) BS01 rna ? GO:0000470 ... P17076 32668200
    7 6ylx:G (3.9) BS02 rna ? GO:0000470 ... P17076 32668200
    8 6ylx:G (3.9) BS03 rna ? GO:0000470 ... P17076 32668200
    9 6ylx:H (3.9) BS01 rna ? GO:0002181 ... P05738 32668200
    10 6ylx:K (3.9) BS01 rna ? GO:0000462 ... P38779 32668200
    11 6ylx:L (3.9) BS01 rna ? GO:0002181 ... Q12690 32668200
    12 6ylx:M (3.9) BS01 rna ? GO:0000027 ... P36105 32668200
    13 6ylx:N (3.9) BS01 rna ? GO:0002181 ... P05748 32668200
    14 6ylx:N (3.9) BS02 rna ? GO:0002181 ... P05748 32668200
    15 6ylx:O (3.9) BS01 rna ? GO:0000470 ... P26784 32668200
    16 6ylx:P (3.9) BS01 rna ? GO:0000448 ... P05740 32668200
    17 6ylx:P (3.9) BS02 rna ? GO:0000448 ... P05740 32668200
    18 6ylx:Q (3.9) BS01 rna ? GO:0002181 ... P0CX49 32668200
    19 6ylx:R (3.9) BS01 rna ? GO:0002181 ... P0CX82 32668200
    20 6ylx:S (3.9) BS01 rna ? GO:0002181 ... P0CX23 32668200
    21 6ylx:T (3.9) BS01 rna ? GO:0002181 ... Q02753 32668200
    22 6ylx:U (3.9) BS01 rna ? GO:0002181 ... P05749 32668200
    23 6ylx:V (3.9) BS01 rna ? GO:0002181 ... P0CX41 32668200
    24 6ylx:W (3.9) BS01 rna ? GO:0000027 ... P33201 32668200
    25 6ylx:X (3.9) BS01 rna ? GO:0000027 ... P04456 32668200
    26 6ylx:X (3.9) BS02 rna ? GO:0000027 ... P04456 32668200
    27 6ylx:Y (3.9) BS01 rna ? GO:0002181 ... P05743 32668200
    28 6ylx:Y (3.9) BS02 rna ? GO:0002181 ... P05743 32668200
    29 6ylx:Z (3.9) BS01 rna ? GO:0002181 ... P0C2H6 32668200
    30 6ylx:a (3.9) BS01 rna ? GO:0002181 ... P02406 32668200
    31 6ylx:b (3.9) BS01 rna ? GO:0000054 ... Q02892 32668200
    32 6ylx:c (3.9) BS01 rna ? GO:0002181 ... P14120 32668200
    33 6ylx:d (3.9) BS01 rna ? GO:0002181 ... P0C2H8 32668200
    34 6ylx:e (3.9) BS01 rna ? GO:0002181 ... P38061 32668200
    35 6ylx:f (3.9) BS01 rna ? GO:0000027 ... P05744 32668200
    36 6ylx:g (3.9) BS01 rna ? GO:0002181 ... P87262 32668200
    37 6ylx:h (3.9) BS01 rna ? GO:0000463 ... P0CX84 32668200
    38 6ylx:h (3.9) BS02 rna ? GO:0000463 ... P0CX84 32668200
    39 6ylx:i (3.9) BS01 rna ? GO:0002181 ... P05745 32668200
    40 6ylx:j (3.9) BS01 rna ? GO:0000448 ... P49166 32668200
    41 6ylx:j (3.9) BS02 rna ? GO:0000448 ... P49166 32668200
    42 6ylx:k (3.9) BS01 rna ? GO:0002181 ... P49167 32668200
    43 6ylx:l (3.9) BS01 rna ? GO:0002181 ... P04650 32668200
    44 6ylx:l (3.9) BS02 rna ? GO:0002181 ... P04650 32668200
    45 6ylx:n (3.9) BS01 rna ? GO:0000462 ... P53261 32668200
    46 6ylx:n (3.9) BS02 rna ? GO:0000462 ... P53261 32668200
    47 6ylx:o (3.9) BS01 rna ? GO:0000463 ... P53927 32668200
    48 6ylx:r (3.9) BS01 rna ? GO:0000460 ... P40078 32668200
    49 6ylx:s (3.9) BS01 rna ? GO:0000055 ... P40010 32668200
    50 6ylx:t (3.9) BS01 rna ? GO:0000463 ... P40693 32668200
    51 6ylx:t (3.9) BS02 rna ? GO:0000463 ... P40693 32668200
    52 6ylx:t (3.9) BS03 rna ? GO:0000463 ... P40693 32668200
    53 6ylx:u (3.9) BS01 rna ? GO:0001671 ... Q07915 32668200
    54 6ylx:w (3.9) BS01 rna 2.1.1.167 GO:0000451 ... P25582 32668200
    55 6ylx:y (3.9) BS01 rna ? GO:0000054 ... Q12522 32668200
    56 6ylx:z (3.9) BS01 rna ? GO:0003674 ... P38202 32668200
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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