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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 182 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6yac:1 (2.5) BS01 CLA N/A GO:0009765 ... N/A 33020607
    2 6yac:1 (2.5) BS02 CLA N/A GO:0009765 ... N/A 33020607
    3 6yac:1 (2.5) BS03 CLA N/A GO:0009765 ... N/A 33020607
    4 6yac:1 (2.5) BS04 CLA N/A GO:0009765 ... N/A 33020607
    5 6yac:1 (2.5) BS05 CLA N/A GO:0009765 ... N/A 33020607
    6 6yac:1 (2.5) BS06 CLA N/A GO:0009765 ... N/A 33020607
    7 6yac:1 (2.5) BS07 CLA N/A GO:0009765 ... N/A 33020607
    8 6yac:1 (2.5) BS08 CLA N/A GO:0009765 ... N/A 33020607
    9 6yac:1 (2.5) BS09 CLA N/A GO:0009765 ... N/A 33020607
    10 6yac:1 (2.5) BS10 CHL N/A GO:0009765 ... N/A 33020607
    11 6yac:1 (2.5) BS11 CLA N/A GO:0009765 ... N/A 33020607
    12 6yac:1 (2.5) BS12 CHL N/A GO:0009765 ... N/A 33020607
    13 6yac:1 (2.5) BS13 CLA N/A GO:0009765 ... N/A 33020607
    14 6yac:1 (2.5) BS14 CLA N/A GO:0009765 ... N/A 33020607
    15 6yac:2 (2.5) BS01 CLA ? GO:0009765 ... Q41038 33020607
    16 6yac:2 (2.5) BS02 CLA ? GO:0009765 ... Q41038 33020607
    17 6yac:2 (2.5) BS03 CLA ? GO:0009765 ... Q41038 33020607
    18 6yac:2 (2.5) BS04 CLA ? GO:0009765 ... Q41038 33020607
    19 6yac:2 (2.5) BS05 CLA ? GO:0009765 ... Q41038 33020607
    20 6yac:2 (2.5) BS06 CLA ? GO:0009765 ... Q41038 33020607
    21 6yac:2 (2.5) BS07 CHL ? GO:0009765 ... Q41038 33020607
    22 6yac:2 (2.5) BS08 CHL ? GO:0009765 ... Q41038 33020607
    23 6yac:2 (2.5) BS09 CHL ? GO:0009765 ... Q41038 33020607
    24 6yac:2 (2.5) BS10 CLA ? GO:0009765 ... Q41038 33020607
    25 6yac:2 (2.5) BS11 CHL ? GO:0009765 ... Q41038 33020607
    26 6yac:2 (2.5) BS12 CHL ? GO:0009765 ... Q41038 33020607
    27 6yac:2 (2.5) BS13 CLA ? GO:0009765 ... Q41038 33020607
    28 6yac:2 (2.5) BS14 CLA ? GO:0009765 ... Q41038 33020607
    29 6yac:3 (2.5) BS01 CLA ? GO:0009765 ... Q32904 33020607
    30 6yac:3 (2.5) BS02 CLA ? GO:0009765 ... Q32904 33020607
    31 6yac:3 (2.5) BS03 CHL ? GO:0009765 ... Q32904 33020607
    32 6yac:3 (2.5) BS04 CLA ? GO:0009765 ... Q32904 33020607
    33 6yac:3 (2.5) BS05 CLA ? GO:0009765 ... Q32904 33020607
    34 6yac:3 (2.5) BS06 CLA ? GO:0009765 ... Q32904 33020607
    35 6yac:3 (2.5) BS07 CHL ? GO:0009765 ... Q32904 33020607
    36 6yac:3 (2.5) BS08 CLA ? GO:0009765 ... Q32904 33020607
    37 6yac:3 (2.5) BS09 CHL ? GO:0009765 ... Q32904 33020607
    38 6yac:3 (2.5) BS10 CLA ? GO:0009765 ... Q32904 33020607
    39 6yac:3 (2.5) BS11 CLA ? GO:0009765 ... Q32904 33020607
    40 6yac:3 (2.5) BS12 CHL ? GO:0009765 ... Q32904 33020607
    41 6yac:3 (2.5) BS13 CLA ? GO:0009765 ... Q32904 33020607
    42 6yac:3 (2.5) BS14 CLA ? GO:0009765 ... Q32904 33020607
    43 6yac:3 (2.5) BS15 CLA ? GO:0009765 ... Q32904 33020607
    44 6yac:3 (2.5) BS16 CLA ? GO:0009765 ... Q32904 33020607
    45 6yac:4 (2.5) BS01 CHL ? GO:0009765 ... Q9SQL2 33020607
    46 6yac:4 (2.5) BS02 CLA ? GO:0009765 ... Q9SQL2 33020607
    47 6yac:4 (2.5) BS03 CLA ? GO:0009765 ... Q9SQL2 33020607
    48 6yac:4 (2.5) BS04 CLA ? GO:0009765 ... Q9SQL2 33020607
    49 6yac:4 (2.5) BS05 CLA ? GO:0009765 ... Q9SQL2 33020607
    50 6yac:4 (2.5) BS06 CLA ? GO:0009765 ... Q9SQL2 33020607
    51 6yac:4 (2.5) BS07 CLA ? GO:0009765 ... Q9SQL2 33020607
    52 6yac:4 (2.5) BS08 CLA ? GO:0009765 ... Q9SQL2 33020607
    53 6yac:4 (2.5) BS09 CHL ? GO:0009765 ... Q9SQL2 33020607
    54 6yac:4 (2.5) BS10 CHL ? GO:0009765 ... Q9SQL2 33020607
    55 6yac:4 (2.5) BS11 CLA ? GO:0009765 ... Q9SQL2 33020607
    56 6yac:4 (2.5) BS12 CHL ? GO:0009765 ... Q9SQL2 33020607
    57 6yac:4 (2.5) BS13 CHL ? GO:0009765 ... Q9SQL2 33020607
    58 6yac:4 (2.5) BS14 CLA ? GO:0009765 ... Q9SQL2 33020607
    59 6yac:A (2.5) BS01 CL0 1.97.1.12 GO:0000287 ... A0A0F6NFW5 33020607
    60 6yac:A (2.5) BS02 CLA 1.97.1.12 GO:0000287 ... A0A0F6NFW5 33020607
    61 6yac:A (2.5) BS03 CLA 1.97.1.12 GO:0000287 ... A0A0F6NFW5 33020607
    62 6yac:A (2.5) BS04 CLA 1.97.1.12 GO:0000287 ... A0A0F6NFW5 33020607
    63 6yac:A (2.5) BS05 CLA 1.97.1.12 GO:0000287 ... A0A0F6NFW5 33020607
    64 6yac:A (2.5) BS06 CLA 1.97.1.12 GO:0000287 ... A0A0F6NFW5 33020607
    65 6yac:A (2.5) BS07 CLA 1.97.1.12 GO:0000287 ... A0A0F6NFW5 33020607
    66 6yac:A (2.5) BS08 CLA 1.97.1.12 GO:0000287 ... A0A0F6NFW5 33020607
    67 6yac:A (2.5) BS09 CLA 1.97.1.12 GO:0000287 ... A0A0F6NFW5 33020607
    68 6yac:A (2.5) BS10 CLA 1.97.1.12 GO:0000287 ... A0A0F6NFW5 33020607
    69 6yac:A (2.5) BS11 CLA 1.97.1.12 GO:0000287 ... A0A0F6NFW5 33020607
    70 6yac:A (2.5) BS12 CLA 1.97.1.12 GO:0000287 ... A0A0F6NFW5 33020607
    71 6yac:A (2.5) BS13 CLA 1.97.1.12 GO:0000287 ... A0A0F6NFW5 33020607
    72 6yac:A (2.5) BS14 CLA 1.97.1.12 GO:0000287 ... A0A0F6NFW5 33020607
    73 6yac:A (2.5) BS15 CLA 1.97.1.12 GO:0000287 ... A0A0F6NFW5 33020607
    74 6yac:A (2.5) BS16 CLA 1.97.1.12 GO:0000287 ... A0A0F6NFW5 33020607
    75 6yac:A (2.5) BS17 CLA 1.97.1.12 GO:0000287 ... A0A0F6NFW5 33020607
    76 6yac:A (2.5) BS18 CLA 1.97.1.12 GO:0000287 ... A0A0F6NFW5 33020607
    77 6yac:A (2.5) BS19 CLA 1.97.1.12 GO:0000287 ... A0A0F6NFW5 33020607
    78 6yac:A (2.5) BS20 CLA 1.97.1.12 GO:0000287 ... A0A0F6NFW5 33020607
    79 6yac:A (2.5) BS21 CLA 1.97.1.12 GO:0000287 ... A0A0F6NFW5 33020607
    80 6yac:A (2.5) BS22 CLA 1.97.1.12 GO:0000287 ... A0A0F6NFW5 33020607
    81 6yac:A (2.5) BS23 CLA 1.97.1.12 GO:0000287 ... A0A0F6NFW5 33020607
    82 6yac:A (2.5) BS24 CLA 1.97.1.12 GO:0000287 ... A0A0F6NFW5 33020607
    83 6yac:A (2.5) BS25 CLA 1.97.1.12 GO:0000287 ... A0A0F6NFW5 33020607
    84 6yac:A (2.5) BS26 CLA 1.97.1.12 GO:0000287 ... A0A0F6NFW5 33020607
    85 6yac:A (2.5) BS27 CLA 1.97.1.12 GO:0000287 ... A0A0F6NFW5 33020607
    86 6yac:A (2.5) BS28 CLA 1.97.1.12 GO:0000287 ... A0A0F6NFW5 33020607
    87 6yac:A (2.5) BS29 CLA 1.97.1.12 GO:0000287 ... A0A0F6NFW5 33020607
    88 6yac:A (2.5) BS30 CLA 1.97.1.12 GO:0000287 ... A0A0F6NFW5 33020607
    89 6yac:A (2.5) BS31 CLA 1.97.1.12 GO:0000287 ... A0A0F6NFW5 33020607
    90 6yac:A (2.5) BS32 CLA 1.97.1.12 GO:0000287 ... A0A0F6NFW5 33020607
    91 6yac:A (2.5) BS33 CLA 1.97.1.12 GO:0000287 ... A0A0F6NFW5 33020607
    92 6yac:A (2.5) BS34 CLA 1.97.1.12 GO:0000287 ... A0A0F6NFW5 33020607
    93 6yac:A (2.5) BS35 CLA 1.97.1.12 GO:0000287 ... A0A0F6NFW5 33020607
    94 6yac:A (2.5) BS36 CLA 1.97.1.12 GO:0000287 ... A0A0F6NFW5 33020607
    95 6yac:A (2.5) BS37 CLA 1.97.1.12 GO:0000287 ... A0A0F6NFW5 33020607
    96 6yac:A (2.5) BS38 CLA 1.97.1.12 GO:0000287 ... A0A0F6NFW5 33020607
    97 6yac:A (2.5) BS39 CLA 1.97.1.12 GO:0000287 ... A0A0F6NFW5 33020607
    98 6yac:A (2.5) BS40 CLA 1.97.1.12 GO:0000287 ... A0A0F6NFW5 33020607
    99 6yac:A (2.5) BS41 CLA 1.97.1.12 GO:0000287 ... A0A0F6NFW5 33020607
    100 6yac:A (2.5) BS42 CLA 1.97.1.12 GO:0000287 ... A0A0F6NFW5 33020607
    101 6yac:A (2.5) BS43 PQN 1.97.1.12 GO:0000287 ... A0A0F6NFW5 33020607
    102 6yac:A (2.5) BS44 SF4 1.97.1.12 GO:0000287 ... A0A0F6NFW5 33020607
    103 6yac:A (2.5) BS45 CLA 1.97.1.12 GO:0000287 ... A0A0F6NFW5 33020607
    104 6yac:A (2.5) BS46 CLA 1.97.1.12 GO:0000287 ... A0A0F6NFW5 33020607
    105 6yac:B (2.5) BS01 CLA 1.97.1.12 GO:0000287 ... A0A0F6NGI2 33020607
    106 6yac:B (2.5) BS02 CLA 1.97.1.12 GO:0000287 ... A0A0F6NGI2 33020607
    107 6yac:B (2.5) BS03 CLA 1.97.1.12 GO:0000287 ... A0A0F6NGI2 33020607
    108 6yac:B (2.5) BS04 SF4 1.97.1.12 GO:0000287 ... A0A0F6NGI2 33020607
    109 6yac:B (2.5) BS05 CLA 1.97.1.12 GO:0000287 ... A0A0F6NGI2 33020607
    110 6yac:B (2.5) BS06 CLA 1.97.1.12 GO:0000287 ... A0A0F6NGI2 33020607
    111 6yac:B (2.5) BS07 CLA 1.97.1.12 GO:0000287 ... A0A0F6NGI2 33020607
    112 6yac:B (2.5) BS08 CLA 1.97.1.12 GO:0000287 ... A0A0F6NGI2 33020607
    113 6yac:B (2.5) BS09 CLA 1.97.1.12 GO:0000287 ... A0A0F6NGI2 33020607
    114 6yac:B (2.5) BS10 CLA 1.97.1.12 GO:0000287 ... A0A0F6NGI2 33020607
    115 6yac:B (2.5) BS11 CLA 1.97.1.12 GO:0000287 ... A0A0F6NGI2 33020607
    116 6yac:B (2.5) BS12 CLA 1.97.1.12 GO:0000287 ... A0A0F6NGI2 33020607
    117 6yac:B (2.5) BS13 CLA 1.97.1.12 GO:0000287 ... A0A0F6NGI2 33020607
    118 6yac:B (2.5) BS14 CLA 1.97.1.12 GO:0000287 ... A0A0F6NGI2 33020607
    119 6yac:B (2.5) BS15 CLA 1.97.1.12 GO:0000287 ... A0A0F6NGI2 33020607
    120 6yac:B (2.5) BS16 CLA 1.97.1.12 GO:0000287 ... A0A0F6NGI2 33020607
    121 6yac:B (2.5) BS17 CLA 1.97.1.12 GO:0000287 ... A0A0F6NGI2 33020607
    122 6yac:B (2.5) BS18 CLA 1.97.1.12 GO:0000287 ... A0A0F6NGI2 33020607
    123 6yac:B (2.5) BS19 CLA 1.97.1.12 GO:0000287 ... A0A0F6NGI2 33020607
    124 6yac:B (2.5) BS20 CLA 1.97.1.12 GO:0000287 ... A0A0F6NGI2 33020607
    125 6yac:B (2.5) BS21 CLA 1.97.1.12 GO:0000287 ... A0A0F6NGI2 33020607
    126 6yac:B (2.5) BS22 CLA 1.97.1.12 GO:0000287 ... A0A0F6NGI2 33020607
    127 6yac:B (2.5) BS23 CLA 1.97.1.12 GO:0000287 ... A0A0F6NGI2 33020607
    128 6yac:B (2.5) BS24 CLA 1.97.1.12 GO:0000287 ... A0A0F6NGI2 33020607
    129 6yac:B (2.5) BS25 CLA 1.97.1.12 GO:0000287 ... A0A0F6NGI2 33020607
    130 6yac:B (2.5) BS26 CLA 1.97.1.12 GO:0000287 ... A0A0F6NGI2 33020607
    131 6yac:B (2.5) BS27 CLA 1.97.1.12 GO:0000287 ... A0A0F6NGI2 33020607
    132 6yac:B (2.5) BS28 CLA 1.97.1.12 GO:0000287 ... A0A0F6NGI2 33020607
    133 6yac:B (2.5) BS29 CLA 1.97.1.12 GO:0000287 ... A0A0F6NGI2 33020607
    134 6yac:B (2.5) BS30 CLA 1.97.1.12 GO:0000287 ... A0A0F6NGI2 33020607
    135 6yac:B (2.5) BS31 CLA 1.97.1.12 GO:0000287 ... A0A0F6NGI2 33020607
    136 6yac:B (2.5) BS32 CLA 1.97.1.12 GO:0000287 ... A0A0F6NGI2 33020607
    137 6yac:B (2.5) BS33 CLA 1.97.1.12 GO:0000287 ... A0A0F6NGI2 33020607
    138 6yac:B (2.5) BS34 CLA 1.97.1.12 GO:0000287 ... A0A0F6NGI2 33020607
    139 6yac:B (2.5) BS35 CLA 1.97.1.12 GO:0000287 ... A0A0F6NGI2 33020607
    140 6yac:B (2.5) BS36 CLA 1.97.1.12 GO:0000287 ... A0A0F6NGI2 33020607
    141 6yac:B (2.5) BS37 CLA 1.97.1.12 GO:0000287 ... A0A0F6NGI2 33020607
    142 6yac:B (2.5) BS38 CLA 1.97.1.12 GO:0000287 ... A0A0F6NGI2 33020607
    143 6yac:B (2.5) BS39 CLA 1.97.1.12 GO:0000287 ... A0A0F6NGI2 33020607
    144 6yac:B (2.5) BS40 CLA 1.97.1.12 GO:0000287 ... A0A0F6NGI2 33020607
    145 6yac:B (2.5) BS41 CLA 1.97.1.12 GO:0000287 ... A0A0F6NGI2 33020607
    146 6yac:B (2.5) BS42 CLA 1.97.1.12 GO:0000287 ... A0A0F6NGI2 33020607
    147 6yac:B (2.5) BS43 CLA 1.97.1.12 GO:0000287 ... A0A0F6NGI2 33020607
    148 6yac:B (2.5) BS44 PQN 1.97.1.12 GO:0000287 ... A0A0F6NGI2 33020607
    149 6yac:B (2.5) BS45 CA 1.97.1.12 GO:0000287 ... A0A0F6NGI2 33020607
    150 6yac:B (2.5) BS46 CLA 1.97.1.12 GO:0000287 ... A0A0F6NGI2 33020607
    151 6yac:C (2.5) BS01 SF4 1.97.1.12 GO:0009055 ... P10793 33020607
    152 6yac:C (2.5) BS02 SF4 1.97.1.12 GO:0009055 ... P10793 33020607
    153 6yac:F (2.5) BS01 CLA ? GO:0009507 ... A0A0M3KL12 33020607
    154 6yac:F (2.5) BS02 CLA ? GO:0009507 ... A0A0M3KL12 33020607
    155 6yac:F (2.5) BS03 CLA ? GO:0009507 ... A0A0M3KL12 33020607
    156 6yac:F (2.5) BS04 CLA ? GO:0009507 ... A0A0M3KL12 33020607
    157 6yac:F (2.5) BS05 CLA ? GO:0009507 ... A0A0M3KL12 33020607
    158 6yac:F (2.5) BS06 CLA ? GO:0009507 ... A0A0M3KL12 33020607
    159 6yac:G (2.5) BS01 CLA N/A GO:0009522 ... N/A 33020607
    160 6yac:G (2.5) BS02 CLA N/A GO:0009522 ... N/A 33020607
    161 6yac:G (2.5) BS03 CLA N/A GO:0009522 ... N/A 33020607
    162 6yac:G (2.5) BS04 CLA N/A GO:0009522 ... N/A 33020607
    163 6yac:H (2.5) BS01 CLA ? GO:0009507 ... A0A0M3KL10 33020607
    164 6yac:H (2.5) BS02 CLA ? GO:0009507 ... A0A0M3KL10 33020607
    165 6yac:H (2.5) BS03 CLA ? GO:0009507 ... A0A0M3KL10 33020607
    166 6yac:I (2.5) BS01 CLA ? GO:0009522 ... P17227 33020607
    167 6yac:I (2.5) BS02 CLA ? GO:0009522 ... P17227 33020607
    168 6yac:J (2.5) BS01 CLA ? GO:0009507 ... D5MAL3 33020607
    169 6yac:J (2.5) BS02 CLA ? GO:0009507 ... D5MAL3 33020607
    170 6yac:J (2.5) BS03 CLA ? GO:0009507 ... D5MAL3 33020607
    171 6yac:K (2.5) BS01 CLA ? GO:0009507 ... E1C9L3 33020607
    172 6yac:K (2.5) BS02 CLA ? GO:0009507 ... E1C9L3 33020607
    173 6yac:K (2.5) BS03 CLA ? GO:0009507 ... E1C9L3 33020607
    174 6yac:K (2.5) BS04 CLA ? GO:0009507 ... E1C9L3 33020607
    175 6yac:K (2.5) BS05 CLA ? GO:0009507 ... E1C9L3 33020607
    176 6yac:L (2.5) BS01 CLA ? GO:0009522 ... E1C9L1 33020607
    177 6yac:L (2.5) BS02 CLA ? GO:0009522 ... E1C9L1 33020607
    178 6yac:L (2.5) BS03 CLA ? GO:0009522 ... E1C9L1 33020607
    179 6yac:L (2.5) BS04 CLA ? GO:0009522 ... E1C9L1 33020607
    180 6yac:L (2.5) BS05 CLA ? GO:0009522 ... E1C9L1 33020607
    181 6yac:L (2.5) BS06 CLA ? GO:0009522 ... E1C9L1 33020607
    182 6yac:N (2.5) BS01 FES ? GO:0009055 ... P09911 33020607
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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