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BioLiP
Download all results in tab-seperated text for 30 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6y7c:A (3.8) BS01 rna ? GO:0000028 ... P32905 32138239
    2 6y7c:B (3.8) BS01 rna ? GO:0000462 ... P33442 32138239
    3 6y7c:C (3.8) BS01 rna ? GO:0000054 ... P25443 32138239
    4 6y7c:E (3.8) BS01 rna ? GO:0002181 ... P0CX35 32138239
    5 6y7c:F (3.8) BS01 rna ? GO:0000028 ... P26783 32138239
    6 6y7c:G (3.8) BS01 rna ? GO:0000462 ... P0CX37 32138239
    7 6y7c:H (3.8) BS01 rna ? GO:0002181 ... P26786 32138239
    8 6y7c:I (3.8) BS01 rna ? GO:0000462 ... P0CX39 32138239
    9 6y7c:J (3.8) BS01 rna ? GO:0000462 ... O13516 32138239
    10 6y7c:L (3.8) BS01 rna ? GO:0000028 ... P0CX47 32138239
    11 6y7c:M (3.8) BS01 rna ? GO:0000028 ... P48589 32138239
    12 6y7c:N (3.8) BS01 rna ? GO:0000462 ... P05756 32138239
    13 6y7c:O (3.8) BS01 rna ? GO:0000028 ... P06367 32138239
    14 6y7c:P (3.8) BS01 rna ? GO:0000028 ... Q01855 32138239
    15 6y7c:Q (3.8) BS01 rna ? GO:0000462 ... P0CX51 32138239
    16 6y7c:R (3.8) BS01 rna ? GO:0000028 ... P02407 32138239
    17 6y7c:S (3.8) BS01 rna ? GO:0000054 ... P0CX55 32138239
    18 6y7c:T (3.8) BS01 rna ? GO:0000028 ... P07280 32138239
    19 6y7c:U (3.8) BS01 rna ? GO:0000462 ... P38701 32138239
    20 6y7c:W (3.8) BS01 rna ? GO:0002181 ... P0C0W1 32138239
    21 6y7c:X (3.8) BS01 rna ? GO:0000462 ... P0CX29 32138239
    22 6y7c:Y (3.8) BS01 rna ? GO:0000462 ... P0CX31 32138239
    23 6y7c:Z (3.8) BS01 rna ? GO:0002181 ... Q3E792 32138239
    24 6y7c:b (3.8) BS01 rna ? GO:0000028 ... P35997 32138239
    25 6y7c:c (3.8) BS01 rna ? GO:0000028 ... Q3E7X9 32138239
    26 6y7c:e (3.8) BS01 rna ? GO:0002181 ... P0CX33 32138239
    27 6y7c:h (3.8) BS01 rna ? GO:0000056 ... Q99216 32138239
    28 6y7c:i (3.8) BS01 rna ? GO:0000447 ... P38333 32138239
    29 6y7c:l (3.8) BS01 rna 2.7.11.1 GO:0000462 ... P40160 32138239
    30 6y7c:t (3.8) BS01 rna ? GO:0000461 ... Q07381 32138239
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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