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BioLiP
Download all results in tab-seperated text for 95 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6xu8:AA (3.0) BS01 rna ? GO:0003735 ... P38979 34283226
    2 6xu8:AB (3.0) BS01 rna ? GO:0003735 ... P55830 34283226
    3 6xu8:AC (3.0) BS01 rna ? GO:0003723 ... P31009 34283226
    4 6xu8:AD (3.0) BS01 rna ? GO:0000278 ... Q06559 34283226
    5 6xu8:AE (3.0) BS01 rna ? GO:0002181 ... P41042 34283226
    6 6xu8:AF (3.0) BS01 rna ? GO:0003723 ... Q9VFE4 34283226
    7 6xu8:AG (3.0) BS01 rna ? GO:0002181 ... P29327 34283226
    8 6xu8:AH (3.0) BS01 rna ? GO:0002181 ... Q9VA91 34283226
    9 6xu8:AI (3.0) BS01 rna ? GO:0000462 ... Q8MLY8 34283226
    10 6xu8:AI (3.0) BS02 rna ? GO:0000462 ... Q8MLY8 34283226
    11 6xu8:AJ (3.0) BS01 rna ? GO:0000228 ... P55935 34283226
    12 6xu8:AK (3.0) BS01 rna ? N/A Q9VWG3 34283226
    13 6xu8:AL (3.0) BS01 rna ? GO:0000228 ... Q0E9B6 34283226
    14 6xu8:AM (3.0) BS01 rna ? N/A P80455 34283226
    15 6xu8:AN (3.0) BS01 rna ? GO:0000228 ... Q03334 34283226
    16 6xu8:AO (3.0) BS01 rna ? GO:0003735 ... C0HKA0 34283226
    17 6xu8:AP (3.0) BS01 rna ? GO:0003723 ... Q7JZW2 34283226
    18 6xu8:AQ (3.0) BS01 rna ? GO:0000462 ... Q9W237 34283226
    19 6xu8:AR (3.0) BS01 rna ? GO:0002181 ... P17704 34283226
    20 6xu8:AS (3.0) BS01 rna ? GO:0003723 ... P41094 34283226
    21 6xu8:AT (3.0) BS01 rna ? GO:0003735 ... P39018 34283226
    22 6xu8:AU (3.0) BS01 rna ? GO:0003723 ... P55828 34283226
    23 6xu8:AV (3.0) BS01 rna ? GO:0000447 ... O76927 34283226
    24 6xu8:AW (3.0) BS01 rna ? GO:0002181 ... P48149 34283226
    25 6xu8:AX (3.0) BS01 rna ? GO:0002181 ... Q8T3U2 34283226
    26 6xu8:AY (3.0) BS01 rna ? GO:0002181 ... Q9W229 34283226
    27 6xu8:AZ (3.0) BS01 rna ? N/A P48588 34283226
    28 6xu8:Aa (3.0) BS01 rna ? GO:0002181 ... P13008 34283226
    29 6xu8:Ab (3.0) BS01 rna ? GO:0000028 ... Q9VBU9 34283226
    30 6xu8:Ac (3.0) BS01 rna ? GO:0000028 ... Q9W334 34283226
    31 6xu8:Ad (3.0) BS01 rna ? GO:0002181 ... Q9VH69 34283226
    32 6xu8:Ae (3.0) BS01 rna ? GO:0003735 ... Q7JYY0 34283226
    33 6xu8:Af (3.0) BS01 rna ? GO:0003735 ... P15357 34283226
    34 6xu8:Ag (3.0) BS01 rna ? GO:0001933 ... O18640 34283226
    35 6xu8:CA (3.0) BS01 rna ? GO:0000228 ... Q9V3G1 34283226
    36 6xu8:CA (3.0) BS02 rna ? GO:0000228 ... Q9V3G1 34283226
    37 6xu8:CB (3.0) BS01 rna ? GO:0002181 ... O16797 34283226
    38 6xu8:CC (3.0) BS01 rna ? GO:0002181 ... P09180 34283226
    39 6xu8:CC (3.0) BS02 rna ? GO:0002181 ... P09180 34283226
    40 6xu8:CD (3.0) BS01 rna ? GO:0000027 ... Q9W5R8 34283226
    41 6xu8:CD (3.0) BS02 rna ? GO:0000027 ... Q9W5R8 34283226
    42 6xu8:CE (3.0) BS01 rna ? GO:0000027 ... Q9V9W2 34283226
    43 6xu8:CF (3.0) BS01 rna ? GO:0000463 ... P32100 34283226
    44 6xu8:CF (3.0) BS02 rna ? GO:0000463 ... P32100 34283226
    45 6xu8:CG (3.0) BS01 rna ? GO:0042254 ... P46223 34283226
    46 6xu8:CG (3.0) BS02 rna ? GO:0042254 ... P46223 34283226
    47 6xu8:CH (3.0) BS01 rna ? GO:0002181 ... P50882 34283226
    48 6xu8:CI (3.0) BS01 rna ? GO:0000027 ... O61231 34283226
    49 6xu8:CI (3.0) BS02 rna ? GO:0000027 ... O61231 34283226
    50 6xu8:CJ (3.0) BS01 rna ? GO:0000228 ... P46222 34283226
    51 6xu8:CJ (3.0) BS02 rna ? GO:0000228 ... P46222 34283226
    52 6xu8:CL (3.0) BS01 rna ? GO:0002181 ... P41126 34283226
    53 6xu8:CL (3.0) BS02 rna ? GO:0002181 ... P41126 34283226
    54 6xu8:CM (3.0) BS01 rna ? GO:0002181 ... P55841 34283226
    55 6xu8:CN (3.0) BS01 rna ? GO:0002181 ... O17445 34283226
    56 6xu8:CN (3.0) BS02 rna ? GO:0002181 ... O17445 34283226
    57 6xu8:CO (3.0) BS01 rna ? GO:0002181 ... Q9VNE9 34283226
    58 6xu8:CP (3.0) BS01 rna ? GO:0002181 ... Q9W3W8 34283226
    59 6xu8:CP (3.0) BS02 rna ? GO:0002181 ... Q9W3W8 34283226
    60 6xu8:CQ (3.0) BS01 rna ? GO:0002181 ... Q9VS34 34283226
    61 6xu8:CR (3.0) BS01 rna ? GO:0002181 ... P36241 34283226
    62 6xu8:CR (3.0) BS02 rna ? GO:0002181 ... P36241 34283226
    63 6xu8:CS (3.0) BS01 rna ? GO:0002181 ... P41093 34283226
    64 6xu8:CS (3.0) BS02 rna ? GO:0002181 ... P41093 34283226
    65 6xu8:CT (3.0) BS01 rna ? GO:0002181 ... Q9V9M7 34283226
    66 6xu8:CT (3.0) BS02 rna ? GO:0002181 ... Q9V9M7 34283226
    67 6xu8:CU (3.0) BS01 rna ? GO:0003735 ... P50887 34283226
    68 6xu8:CV (3.0) BS01 rna ? GO:0002181 ... P48159 34283226
    69 6xu8:CW (3.0) BS01 rna ? N/A Q9VJY6 34283226
    70 6xu8:CX (3.0) BS01 rna ? GO:0003735 ... A1A6X4 34283226
    71 6xu8:CX (3.0) BS02 rna ? GO:0003735 ... A1A6X4 34283226
    72 6xu8:CX (3.0) BS03 rna ? GO:0003735 ... A1A6X4 34283226
    73 6xu8:CY (3.0) BS01 rna ? GO:0003723 ... Q9VVU2 34283226
    74 6xu8:CY (3.0) BS02 rna ? GO:0003723 ... Q9VVU2 34283226
    75 6xu8:CZ (3.0) BS01 rna ? GO:0002181 ... Q9VBN5 34283226
    76 6xu8:Ca (3.0) BS01 rna ? GO:0002181 ... P41092 34283226
    77 6xu8:Cb (3.0) BS01 rna ? GO:0002181 ... Q24154 34283226
    78 6xu8:Cc (3.0) BS01 rna ? GO:0002181 ... Q9VJ19 34283226
    79 6xu8:Cd (3.0) BS01 rna ? GO:0003735 ... Q9V597 34283226
    80 6xu8:Ce (3.0) BS01 rna ? GO:0000228 ... P04359 34283226
    81 6xu8:Cf (3.0) BS01 rna ? GO:0002181 ... Q9VNB9 34283226
    82 6xu8:Cg (3.0) BS01 rna ? GO:0003735 ... Q9VHE5 34283226
    83 6xu8:Ch (3.0) BS01 rna ? GO:0000463 ... Q9W499 34283226
    84 6xu8:Ch (3.0) BS02 rna ? GO:0000463 ... Q9W499 34283226
    85 6xu8:Ci (3.0) BS01 rna ? GO:0000228 ... P49630 34283226
    86 6xu8:Cj (3.0) BS01 rna ? GO:0002181 ... Q9VXX8 34283226
    87 6xu8:Cj (3.0) BS02 rna ? GO:0002181 ... Q9VXX8 34283226
    88 6xu8:Ck (3.0) BS01 rna ? GO:0002181 ... Q9W5N2 34283226
    89 6xu8:Cl (3.0) BS01 rna ? GO:0002181 ... O16130 34283226
    90 6xu8:Cl (3.0) BS02 rna ? GO:0002181 ... O16130 34283226
    91 6xu8:Cm (3.0) BS01 rna ? GO:0003735 ... P18101 34283226
    92 6xu8:Co (3.0) BS01 rna ? GO:0003735 ... C5WLN8 34283226
    93 6xu8:Cp (3.0) BS01 rna ? GO:0002181 ... Q9VMU4 34283226
    94 6xu8:Cr (3.0) BS01 rna ? GO:0002181 ... Q9VZS5 34283226
    95 6xu8:Cz (3.0) BS01 rna ? GO:0002181 ... Q9VTP4 34283226
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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