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BioLiP
Download all results in tab-seperated text for 97 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6xu6:AA (3.5) BS01 rna ? GO:0003735 ... P38979 34283226
    2 6xu6:AB (3.5) BS01 rna ? GO:0003735 ... P55830 34283226
    3 6xu6:AC (3.5) BS01 rna ? GO:0003723 ... P31009 34283226
    4 6xu6:AD (3.5) BS01 rna ? GO:0000278 ... Q06559 34283226
    5 6xu6:AE (3.5) BS01 rna ? GO:0002181 ... P41042 34283226
    6 6xu6:AF (3.5) BS01 rna ? GO:0003723 ... Q24186 34283226
    7 6xu6:AG (3.5) BS01 rna ? GO:0002181 ... P29327 34283226
    8 6xu6:AH (3.5) BS01 rna ? GO:0002181 ... Q9VA91 34283226
    9 6xu6:AI (3.5) BS01 rna ? GO:0000462 ... Q8MLY8 34283226
    10 6xu6:AI (3.5) BS02 rna ? GO:0000462 ... Q8MLY8 34283226
    11 6xu6:AJ (3.5) BS01 rna ? GO:0000228 ... P55935 34283226
    12 6xu6:AK (3.5) BS01 rna ? N/A Q9VWG3 34283226
    13 6xu6:AL (3.5) BS01 rna ? GO:0000228 ... Q0E9B6 34283226
    14 6xu6:AM (3.5) BS01 rna ? N/A P80455 34283226
    15 6xu6:AN (3.5) BS01 rna ? GO:0000228 ... Q03334 34283226
    16 6xu6:AN (3.5) BS02 rna ? GO:0000228 ... Q03334 34283226
    17 6xu6:AO (3.5) BS01 rna ? GO:0003735 ... C0HKA0 34283226
    18 6xu6:AP (3.5) BS01 rna ? GO:0003723 ... Q7JZW2 34283226
    19 6xu6:AQ (3.5) BS01 rna ? GO:0000462 ... Q9W237 34283226
    20 6xu6:AR (3.5) BS01 rna ? GO:0002181 ... P17704 34283226
    21 6xu6:AS (3.5) BS01 rna ? GO:0003723 ... P41094 34283226
    22 6xu6:AT (3.5) BS01 rna ? GO:0000028 ... P39018 34283226
    23 6xu6:AU (3.5) BS01 rna ? GO:0003723 ... P55828 34283226
    24 6xu6:AW (3.5) BS01 rna ? GO:0002181 ... P48149 34283226
    25 6xu6:AX (3.5) BS01 rna ? GO:0002181 ... Q8T3U2 34283226
    26 6xu6:AY (3.5) BS01 rna ? GO:0002181 ... Q9W229 34283226
    27 6xu6:AZ (3.5) BS01 rna ? N/A P48588 34283226
    28 6xu6:Aa (3.5) BS01 rna ? GO:0002181 ... P13008 34283226
    29 6xu6:Ab (3.5) BS01 rna ? GO:0000028 ... Q9VBU9 34283226
    30 6xu6:Ac (3.5) BS01 rna ? GO:0000028 ... Q9W334 34283226
    31 6xu6:Ad (3.5) BS01 rna ? GO:0002181 ... Q9VH69 34283226
    32 6xu6:Ae (3.5) BS01 rna ? GO:0003735 ... Q7JYY0 34283226
    33 6xu6:Af (3.5) BS01 rna ? GO:0003735 ... P15357 34283226
    34 6xu6:Ag (3.5) BS01 rna ? GO:0001933 ... O18640 34283226
    35 6xu6:CA (3.5) BS01 rna ? GO:0000228 ... Q9V3G1 34283226
    36 6xu6:CA (3.5) BS02 rna ? GO:0000228 ... Q9V3G1 34283226
    37 6xu6:CB (3.5) BS01 rna ? GO:0002181 ... O16797 34283226
    38 6xu6:CC (3.5) BS01 rna ? GO:0002181 ... P09180 34283226
    39 6xu6:CC (3.5) BS02 rna ? GO:0002181 ... P09180 34283226
    40 6xu6:CD (3.5) BS01 rna ? GO:0000027 ... Q9W5R8 34283226
    41 6xu6:CD (3.5) BS02 rna ? GO:0000027 ... Q9W5R8 34283226
    42 6xu6:CE (3.5) BS01 rna ? GO:0000027 ... Q9V9W2 34283226
    43 6xu6:CF (3.5) BS01 rna ? GO:0000463 ... P32100 34283226
    44 6xu6:CF (3.5) BS02 rna ? GO:0000463 ... P32100 34283226
    45 6xu6:CG (3.5) BS01 rna ? GO:0042254 ... P46223 34283226
    46 6xu6:CG (3.5) BS02 rna ? GO:0042254 ... P46223 34283226
    47 6xu6:CH (3.5) BS01 rna ? GO:0002181 ... P50882 34283226
    48 6xu6:CI (3.5) BS01 rna ? GO:0000027 ... O61231 34283226
    49 6xu6:CI (3.5) BS02 rna ? GO:0000027 ... O61231 34283226
    50 6xu6:CJ (3.5) BS01 rna ? GO:0000228 ... P46222 34283226
    51 6xu6:CJ (3.5) BS02 rna ? GO:0000228 ... P46222 34283226
    52 6xu6:CL (3.5) BS01 rna ? GO:0002181 ... P41126 34283226
    53 6xu6:CL (3.5) BS02 rna ? GO:0002181 ... P41126 34283226
    54 6xu6:CM (3.5) BS01 rna ? GO:0002181 ... P55841 34283226
    55 6xu6:CN (3.5) BS01 rna ? GO:0002181 ... O17445 34283226
    56 6xu6:CN (3.5) BS02 rna ? GO:0002181 ... O17445 34283226
    57 6xu6:CO (3.5) BS01 rna ? GO:0002181 ... Q9VNE9 34283226
    58 6xu6:CP (3.5) BS01 rna ? GO:0002181 ... Q9W3W8 34283226
    59 6xu6:CP (3.5) BS02 rna ? GO:0002181 ... Q9W3W8 34283226
    60 6xu6:CQ (3.5) BS01 rna ? GO:0002181 ... Q9VS34 34283226
    61 6xu6:CR (3.5) BS01 rna ? GO:0002181 ... P36241 34283226
    62 6xu6:CR (3.5) BS02 rna ? GO:0002181 ... P36241 34283226
    63 6xu6:CS (3.5) BS01 rna ? GO:0002181 ... P41093 34283226
    64 6xu6:CS (3.5) BS02 rna ? GO:0002181 ... P41093 34283226
    65 6xu6:CT (3.5) BS01 rna ? GO:0002181 ... Q9V9M7 34283226
    66 6xu6:CT (3.5) BS02 rna ? GO:0002181 ... Q9V9M7 34283226
    67 6xu6:CU (3.5) BS01 rna ? GO:0003735 ... E2JE76 34283226
    68 6xu6:CV (3.5) BS01 rna ? GO:0002181 ... P48159 34283226
    69 6xu6:CW (3.5) BS01 rna ? N/A Q9VJY6 34283226
    70 6xu6:CX (3.5) BS01 rna ? GO:0003735 ... A1A6X4 34283226
    71 6xu6:CX (3.5) BS02 rna ? GO:0003735 ... A1A6X4 34283226
    72 6xu6:CX (3.5) BS03 rna ? GO:0003735 ... A1A6X4 34283226
    73 6xu6:CY (3.5) BS01 rna ? GO:0003723 ... Q9VVU2 34283226
    74 6xu6:CY (3.5) BS02 rna ? GO:0003723 ... Q9VVU2 34283226
    75 6xu6:CZ (3.5) BS01 rna ? GO:0002181 ... Q9VBN5 34283226
    76 6xu6:Ca (3.5) BS01 rna ? GO:0002181 ... P41092 34283226
    77 6xu6:Cb (3.5) BS01 rna ? GO:0002181 ... Q24154 34283226
    78 6xu6:Cc (3.5) BS01 rna ? GO:0002181 ... Q9VJ19 34283226
    79 6xu6:Cd (3.5) BS01 rna ? GO:0003735 ... Q9V597 34283226
    80 6xu6:Ce (3.5) BS01 rna ? GO:0000228 ... P04359 34283226
    81 6xu6:Cf (3.5) BS01 rna ? GO:0002181 ... Q9VNB9 34283226
    82 6xu6:Cg (3.5) BS01 rna ? GO:0003735 ... Q9VHE5 34283226
    83 6xu6:Ch (3.5) BS01 rna ? GO:0000463 ... Q9W499 34283226
    84 6xu6:Ch (3.5) BS02 rna ? GO:0000463 ... Q9W499 34283226
    85 6xu6:Ci (3.5) BS01 rna ? GO:0000228 ... P49630 34283226
    86 6xu6:Cj (3.5) BS01 rna ? GO:0002181 ... Q9W1U6 34283226
    87 6xu6:Cj (3.5) BS02 rna ? GO:0002181 ... Q9W1U6 34283226
    88 6xu6:Ck (3.5) BS01 rna ? GO:0002181 ... Q9W5N2 34283226
    89 6xu6:Cl (3.5) BS01 rna ? GO:0002181 ... O16130 34283226
    90 6xu6:Cl (3.5) BS02 rna ? GO:0002181 ... O16130 34283226
    91 6xu6:Cm (3.5) BS01 rna ? GO:0003735 ... P18101 34283226
    92 6xu6:Co (3.5) BS01 rna ? GO:0003735 ... C5WLN8 34283226
    93 6xu6:Cp (3.5) BS01 rna ? GO:0002181 ... Q9VMU4 34283226
    94 6xu6:Cr (3.5) BS01 rna ? GO:0002181 ... Q9VZS5 34283226
    95 6xu6:Cz (3.5) BS01 rna ? GO:0002181 ... Q9VTP4 34283226
    96 6xu6:DA (3.5) BS01 rna ? N/A Q9VQI5 34283226
    97 6xu6:DA (3.5) BS02 rna ? N/A Q9VQI5 34283226
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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