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BioLiP Library
Download all results in tab-seperated text for 97 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6xir:A (3.2) BS01 rna ? GO:0002181 ... P0CX45 32855298
    2 6xir:A (3.2) BS02 rna ? GO:0002181 ... P0CX45 32855298
    3 6xir:AA (3.2) BS01 rna ? GO:0000054 ... Q08745 32855298
    4 6xir:AB (3.2) BS01 rna ? GO:0000028 ... P0CX47 32855298
    5 6xir:AD (3.2) BS01 rna ? GO:0000462 ... P05756 32855298
    6 6xir:AD (3.2) BS02 rna ? GO:0000462 ... P05756 32855298
    7 6xir:AE (3.2) BS01 rna ? GO:0000028 ... P39516 32855298
    8 6xir:AF (3.2) BS01 rna ? GO:0003723 ... N/A 32855298
    9 6xir:AG (3.2) BS01 rna ? GO:0000462 ... P0CX51 32855298
    10 6xir:AH (3.2) BS01 rna ? GO:0000028 ... P14127 32855298
    11 6xir:AI (3.2) BS01 rna ? GO:0000054 ... P0CX55 32855298
    12 6xir:AJ (3.2) BS01 rna ? GO:0000028 ... P07280 32855298
    13 6xir:AK (3.2) BS01 rna ? GO:0003723 ... N/A 32855298
    14 6xir:AL (3.2) BS01 rna ? GO:0000447 ... P0C0V8 32855298
    15 6xir:AM (3.2) BS01 rna ? GO:0003735 ... N/A 32855298
    16 6xir:AN (3.2) BS01 rna ? GO:0000462 ... P0CX29 32855298
    17 6xir:AO (3.2) BS01 rna ? GO:0000462 ... P0CX31 32855298
    18 6xir:AP (3.2) BS01 rna ? N/A N/A 32855298
    19 6xir:AQ (3.2) BS01 peptide ? GO:0003735 ... N/A 32855298
    20 6xir:AQ (3.2) BS02 rna ? GO:0003735 ... N/A 32855298
    21 6xir:AQ (3.2) BS03 ZN ? GO:0003735 ... N/A 32855298
    22 6xir:AR (3.2) BS01 rna ? GO:0000028 ... P35997 32855298
    23 6xir:AR (3.2) BS02 ZN ? GO:0000028 ... P35997 32855298
    24 6xir:AS (3.2) BS01 rna ? GO:0003735 ... N/A 32855298
    25 6xir:AT (3.2) BS01 rna ? GO:0003735 ... N/A 32855298
    26 6xir:AT (3.2) BS02 ZN ? GO:0003735 ... N/A 32855298
    27 6xir:B (3.2) BS01 rna ? GO:0003735 ... N/A 32855298
    28 6xir:C (3.2) BS01 rna ? GO:0003735 ... N/A 32855298
    29 6xir:C (3.2) BS02 rna ? GO:0003735 ... N/A 32855298
    30 6xir:D (3.2) BS01 rna ? GO:0003735 ... N/A 32855298
    31 6xir:D (3.2) BS02 rna ? GO:0003735 ... N/A 32855298
    32 6xir:E (3.2) BS01 rna ? GO:0000027 ... Q02326 32855298
    33 6xir:F (3.2) BS01 rna ? GO:0000463 ... P05737 32855298
    34 6xir:F (3.2) BS02 rna ? GO:0000463 ... P05737 32855298
    35 6xir:G (3.2) BS01 rna N/A GO:0042254 ... N/A 32855298
    36 6xir:G (3.2) BS02 rna N/A GO:0042254 ... N/A 32855298
    37 6xir:H (3.2) BS01 rna N/A GO:0003735 ... N/A 32855298
    38 6xir:I (3.2) BS01 rna ? GO:0003735 ... N/A 32855298
    39 6xir:I (3.2) BS02 rna ? GO:0003735 ... N/A 32855298
    40 6xir:I (3.2) BS03 rna ? GO:0003735 ... N/A 32855298
    41 6xir:J (3.2) BS01 rna ? GO:0003735 ... N/A 32855298
    42 6xir:J (3.2) BS02 rna ? GO:0003735 ... N/A 32855298
    43 6xir:L (3.2) BS01 rna ? GO:0002181 ... Q12690 32855298
    44 6xir:L (3.2) BS02 rna ? GO:0002181 ... Q12690 32855298
    45 6xir:M (3.2) BS01 rna ? GO:0000027 ... P36105 32855298
    46 6xir:N (3.2) BS01 rna ? GO:0002181 ... P05748 32855298
    47 6xir:N (3.2) BS02 rna ? GO:0002181 ... P05748 32855298
    48 6xir:O (3.2) BS01 rna ? GO:0000470 ... P26784 32855298
    49 6xir:P (3.2) BS01 rna ? GO:0000448 ... P05740 32855298
    50 6xir:P (3.2) BS02 rna ? GO:0000448 ... P05740 32855298
    51 6xir:Q (3.2) BS01 rna ? GO:0002181 ... P0CX49 32855298
    52 6xir:R (3.2) BS01 rna ? GO:0002181 ... P0CX82 32855298
    53 6xir:R (3.2) BS02 rna ? GO:0002181 ... P0CX82 32855298
    54 6xir:S (3.2) BS01 rna ? GO:0002181 ... P0CX23 32855298
    55 6xir:S (3.2) BS02 rna ? GO:0002181 ... P0CX23 32855298
    56 6xir:T (3.2) BS01 rna ? GO:0002181 ... Q02753 32855298
    57 6xir:T (3.2) BS02 rna ? GO:0002181 ... Q02753 32855298
    58 6xir:U (3.2) BS01 rna ? GO:0002181 ... P05749 32855298
    59 6xir:V (3.2) BS01 rna ? GO:0002181 ... P0CX41 32855298
    60 6xir:V (3.2) BS02 rna ? GO:0002181 ... P0CX41 32855298
    61 6xir:W (3.2) BS01 rna ? N/A N/A 32855298
    62 6xir:X (3.2) BS01 rna ? GO:0000027 ... P04456 32855298
    63 6xir:X (3.2) BS02 rna ? GO:0000027 ... P04456 32855298
    64 6xir:Y (3.2) BS01 rna ? GO:0002181 ... P05743 32855298
    65 6xir:Y (3.2) BS02 rna ? GO:0002181 ... P05743 32855298
    66 6xir:Z (3.2) BS01 rna ? GO:0002181 ... P0C2H6 32855298
    67 6xir:a (3.2) BS01 rna ? GO:0002181 ... P02406 32855298
    68 6xir:b (3.2) BS01 rna ? GO:0003735 ... N/A 32855298
    69 6xir:c (3.2) BS01 rna ? GO:0002181 ... P14120 32855298
    70 6xir:d (3.2) BS01 rna ? GO:0002181 ... P0C2H8 32855298
    71 6xir:e (3.2) BS01 rna ? GO:0003735 ... N/A 32855298
    72 6xir:f (3.2) BS01 rna ? GO:0000027 ... P05744 32855298
    73 6xir:g (3.2) BS01 rna ? GO:0002181 ... P87262 32855298
    74 6xir:h (3.2) BS01 rna ? GO:0000463 ... P0CX84 32855298
    75 6xir:h (3.2) BS02 rna ? GO:0000463 ... P0CX84 32855298
    76 6xir:i (3.2) BS01 rna ? GO:0002181 ... P05745 32855298
    77 6xir:j (3.2) BS01 rna ? GO:0000448 ... P49166 32855298
    78 6xir:j (3.2) BS02 rna ? GO:0000448 ... P49166 32855298
    79 6xir:j (3.2) BS03 ZN ? GO:0000448 ... P49166 32855298
    80 6xir:k (3.2) BS01 rna ? GO:0003735 ... N/A 32855298
    81 6xir:l (3.2) BS01 rna ? GO:0002181 ... P04650 32855298
    82 6xir:l (3.2) BS02 rna ? GO:0002181 ... P04650 32855298
    83 6xir:o (3.2) BS01 rna ? GO:0002181 ... P0CX27 32855298
    84 6xir:o (3.2) BS02 ZN ? GO:0002181 ... P0CX27 32855298
    85 6xir:p (3.2) BS01 rna ? GO:0002181 ... P0CX25 32855298
    86 6xir:p (3.2) BS02 ZN ? GO:0002181 ... P0CX25 32855298
    87 6xir:q (3.2) BS01 rna ? GO:0000028 ... P32905 32855298
    88 6xir:r (3.2) BS01 rna ? GO:0003735 ... N/A 32855298
    89 6xir:s (3.2) BS01 rna ? GO:0003723 ... N/A 32855298
    90 6xir:t (3.2) BS01 rna ? GO:0003723 ... N/A 32855298
    91 6xir:u (3.2) BS01 rna ? GO:0002181 ... P0CX35 32855298
    92 6xir:v (3.2) BS01 rna ? GO:0000028 ... A0A1L4AA68 32855298
    93 6xir:w (3.2) BS01 rna ? GO:0000462 ... P0CX37 32855298
    94 6xir:x (3.2) BS01 rna ? GO:0002181 ... P26786 32855298
    95 6xir:y (3.2) BS01 rna ? GO:0003735 ... N/A 32855298
    96 6xir:y (3.2) BS02 rna ? GO:0003735 ... N/A 32855298
    97 6xir:z (3.2) BS01 rna ? GO:0000462 ... O13516 32855298
    Reference:
    • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
    • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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