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BioLiP
Download all results in tab-seperated text for 106 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6woo:1 (2.9) BS01 rna 3.6.5.3 GO:0003924 ... P39730 N/A
    2 6woo:1 (2.9) BS02 rna 3.6.5.3 GO:0003924 ... P39730 N/A
    3 6woo:1 (2.9) BS03 rna 3.6.5.3 GO:0003924 ... P39730 N/A
    4 6woo:1 (2.9) BS04 GDP 3.6.5.3 GO:0003924 ... P39730 N/A
    5 6woo:1 (2.9) BS05 MET 3.6.5.3 GO:0003924 ... P39730 N/A
    6 6woo:A (2.9) BS01 rna ? GO:0002181 ... P0CX45 N/A
    7 6woo:A (2.9) BS02 rna ? GO:0002181 ... P0CX45 N/A
    8 6woo:AA (2.9) BS01 rna ? GO:0003735 ... P46654 N/A
    9 6woo:B (2.9) BS01 rna ? GO:0000027 ... P14126 N/A
    10 6woo:BB (2.9) BS01 rna ? GO:0003735 ... P23248 N/A
    11 6woo:C (2.9) BS01 rna ? GO:0002181 ... P10664 N/A
    12 6woo:C (2.9) BS02 rna ? GO:0002181 ... P10664 N/A
    13 6woo:CC (2.9) BS01 rna ? GO:0003723 ... P25443 N/A
    14 6woo:D (2.9) BS01 rna ? GO:0000027 ... P26321 N/A
    15 6woo:D (2.9) BS02 rna ? GO:0000027 ... P26321 N/A
    16 6woo:DD (2.9) BS01 rna ? GO:0000054 ... P05750 N/A
    17 6woo:E (2.9) BS01 rna ? GO:0000027 ... Q02326 N/A
    18 6woo:EE (2.9) BS01 rna ? GO:0002181 ... P0CX35 N/A
    19 6woo:F (2.9) BS01 rna ? GO:0000463 ... P05737 N/A
    20 6woo:F (2.9) BS02 rna ? GO:0000463 ... P05737 N/A
    21 6woo:FF (2.9) BS01 rna ? GO:0000028 ... A0A1L4AA68 N/A
    22 6woo:G (2.9) BS01 rna ? GO:0000470 ... P17076 N/A
    23 6woo:G (2.9) BS02 rna ? GO:0000470 ... P17076 N/A
    24 6woo:GG (2.9) BS01 rna ? GO:0000462 ... P0CX37 N/A
    25 6woo:H (2.9) BS01 rna ? GO:0002181 ... P51401 N/A
    26 6woo:HH (2.9) BS01 rna ? GO:0002181 ... P26786 N/A
    27 6woo:I (2.9) BS01 rna ? GO:0000027 ... P41805 N/A
    28 6woo:I (2.9) BS02 rna ? GO:0000027 ... P41805 N/A
    29 6woo:I (2.9) BS03 rna ? GO:0000027 ... P41805 N/A
    30 6woo:II (2.9) BS01 rna ? GO:0000462 ... P0CX39 N/A
    31 6woo:II (2.9) BS02 rna ? GO:0000462 ... P0CX39 N/A
    32 6woo:J (2.9) BS01 rna ? GO:0000027 ... Q3E757 N/A
    33 6woo:J (2.9) BS02 rna ? GO:0000027 ... Q3E757 N/A
    34 6woo:JJ (2.9) BS01 rna ? GO:0000462 ... P05755 N/A
    35 6woo:K (2.9) BS01 rna N/A N/A N/A N/A
    36 6woo:KK (2.9) BS01 rna ? GO:0000054 ... Q08745 N/A
    37 6woo:L (2.9) BS01 rna ? GO:0002181 ... Q12690 N/A
    38 6woo:L (2.9) BS02 rna ? GO:0002181 ... Q12690 N/A
    39 6woo:LL (2.9) BS01 rna ? GO:0000028 ... P0CX47 N/A
    40 6woo:M (2.9) BS01 rna ? GO:0000027 ... P36105 N/A
    41 6woo:MM (2.9) BS01 rna ? GO:0003735 ... P48589 N/A
    42 6woo:N (2.9) BS01 rna ? GO:0002181 ... P05748 N/A
    43 6woo:N (2.9) BS02 rna ? GO:0002181 ... P05748 N/A
    44 6woo:NN (2.9) BS01 rna ? GO:0000462 ... P05756 N/A
    45 6woo:NN (2.9) BS02 rna ? GO:0000462 ... P05756 N/A
    46 6woo:O (2.9) BS01 rna ? GO:0000470 ... P26784 N/A
    47 6woo:OO (2.9) BS01 rna ? GO:0000028 ... P39516 N/A
    48 6woo:P (2.9) BS01 rna ? GO:0000448 ... P05740 N/A
    49 6woo:P (2.9) BS02 rna ? GO:0000448 ... P05740 N/A
    50 6woo:PP (2.9) BS01 rna ? GO:0003723 ... Q01855 N/A
    51 6woo:Q (2.9) BS01 rna ? GO:0002181 ... P0CX49 N/A
    52 6woo:QQ (2.9) BS01 rna ? GO:0000462 ... P0CX51 N/A
    53 6woo:R (2.9) BS01 rna ? GO:0002181 ... P0CX82 N/A
    54 6woo:R (2.9) BS02 rna ? GO:0002181 ... P0CX82 N/A
    55 6woo:RR (2.9) BS01 rna ? GO:0000028 ... P14127 N/A
    56 6woo:S (2.9) BS01 rna ? GO:0002181 ... P0CX23 N/A
    57 6woo:S (2.9) BS02 rna ? GO:0002181 ... P0CX23 N/A
    58 6woo:SS (2.9) BS01 rna ? GO:0000054 ... P0CX55 N/A
    59 6woo:T (2.9) BS01 rna ? GO:0002181 ... Q02753 N/A
    60 6woo:T (2.9) BS02 rna ? GO:0002181 ... Q02753 N/A
    61 6woo:TT (2.9) BS01 rna ? GO:0000028 ... P07280 N/A
    62 6woo:U (2.9) BS01 rna ? GO:0003735 ... P05749 N/A
    63 6woo:UU (2.9) BS01 rna ? GO:0003723 ... P38701 N/A
    64 6woo:V (2.9) BS01 rna ? GO:0002181 ... P0CX41 N/A
    65 6woo:W (2.9) BS01 rna ? N/A P04449 N/A
    66 6woo:WW (2.9) BS01 rna ? GO:0002181 ... P0C0W1 N/A
    67 6woo:X (2.9) BS01 rna ? GO:0003735 ... P04456 N/A
    68 6woo:X (2.9) BS02 rna ? GO:0003735 ... P04456 N/A
    69 6woo:XX (2.9) BS01 rna ? GO:0000462 ... P0CX29 N/A
    70 6woo:Y (2.9) BS01 rna ? GO:0002181 ... P05743 N/A
    71 6woo:Y (2.9) BS02 rna ? GO:0002181 ... P05743 N/A
    72 6woo:YY (2.9) BS01 rna ? GO:0000462 ... P0CX31 N/A
    73 6woo:Z (2.9) BS01 rna ? GO:0002181 ... P0C2H6 N/A
    74 6woo:ZZ (2.9) BS01 rna ? N/A Q3E792 N/A
    75 6woo:a (2.9) BS01 rna ? GO:0002181 ... P02406 N/A
    76 6woo:aa (2.9) BS01 rna ? GO:0003735 ... P39939 N/A
    77 6woo:aa (2.9) BS02 ZN ? GO:0003735 ... P39939 N/A
    78 6woo:b (2.9) BS01 rna ? GO:0002181 ... P05747 N/A
    79 6woo:bb (2.9) BS01 rna ? GO:0000028 ... P35997 N/A
    80 6woo:c (2.9) BS01 rna ? GO:0002181 ... P14120 N/A
    81 6woo:cc (2.9) BS01 rna ? GO:0000028 ... Q3E7X9 N/A
    82 6woo:d (2.9) BS01 rna ? GO:0002181 ... P0C2H8 N/A
    83 6woo:dd (2.9) BS01 rna ? GO:0002181 ... P41057 N/A
    84 6woo:e (2.9) BS01 rna ? GO:0002181 ... P38061 N/A
    85 6woo:ee (2.9) BS01 rna ? GO:0003735 ... P0CX33 N/A
    86 6woo:f (2.9) BS01 rna ? GO:0000027 ... P05744 N/A
    87 6woo:ff (2.9) BS01 rna ? GO:0003735 ... P05759 N/A
    88 6woo:ff (2.9) BS02 ZN ? GO:0003735 ... P05759 N/A
    89 6woo:g (2.9) BS01 rna ? GO:0002181 ... P87262 N/A
    90 6woo:gg (2.9) BS01 rna ? GO:0001965 ... P38011 N/A
    91 6woo:h (2.9) BS01 rna ? GO:0000463 ... P0CX84 N/A
    92 6woo:h (2.9) BS02 rna ? GO:0000463 ... P0CX84 N/A
    93 6woo:i (2.9) BS01 rna ? GO:0002181 ... P05745 N/A
    94 6woo:j (2.9) BS01 rna ? GO:0000448 ... P49166 N/A
    95 6woo:j (2.9) BS02 rna ? GO:0000448 ... P49166 N/A
    96 6woo:j (2.9) BS03 ZN ? GO:0000448 ... P49166 N/A
    97 6woo:k (2.9) BS01 rna ? GO:0002181 ... P49167 N/A
    98 6woo:l (2.9) BS01 rna ? GO:0002181 ... P04650 N/A
    99 6woo:l (2.9) BS02 rna ? GO:0002181 ... P04650 N/A
    100 6woo:m (2.9) BS01 rna ? GO:0003735 ... P0CH08 N/A
    101 6woo:m (2.9) BS02 ZN ? GO:0003735 ... P0CH08 N/A
    102 6woo:o (2.9) BS01 rna ? GO:0002181 ... P0CX27 N/A
    103 6woo:o (2.9) BS02 ZN ? GO:0002181 ... P0CX27 N/A
    104 6woo:p (2.9) BS01 rna ? GO:0002181 ... P0CX25 N/A
    105 6woo:q (2.9) BS01 rna ? GO:0000055 ... P0CX43 N/A
    106 6woo:r (2.9) BS01 rna ? N/A P05317 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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