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BioLiP
Download all results in tab-seperated text for 64 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6wdg:B (3.3) BS01 rna ? GO:0000027 ... P0A7N4 32612237
    2 6wdg:C (3.3) BS01 rna ? GO:0000027 ... P0A7N9 32612237
    3 6wdg:D (3.3) BS01 rna ? GO:0002181 ... P0A7P5 32612237
    4 6wdg:E (3.3) BS01 rna ? GO:0002181 ... P0A7Q1 32612237
    5 6wdg:F (3.3) BS01 rna ? GO:0002181 ... P0A7Q6 32612237
    6 6wdg:G (3.3) BS01 rna ? GO:0000028 ... P0A7V0 32612237
    7 6wdg:H (3.3) BS01 rna ? GO:0003676 ... P0A7V3 32612237
    8 6wdg:I (3.3) BS01 rna ? GO:0000028 ... P0A7V8 32612237
    9 6wdg:J (3.3) BS01 rna ? GO:0000028 ... P0A7W1 32612237
    10 6wdg:K (3.3) BS01 rna ? GO:0003735 ... P02358 32612237
    11 6wdg:L (3.3) BS01 rna ? GO:0003723 ... P02359 32612237
    12 6wdg:M (3.3) BS01 rna ? GO:0000028 ... P0A7W7 32612237
    13 6wdg:N (3.3) BS01 rna ? GO:0000049 ... P0A7X3 32612237
    14 6wdg:N (3.3) BS02 rna ? GO:0000049 ... P0A7X3 32612237
    15 6wdg:O (3.3) BS01 rna ? GO:0000049 ... P0A7R5 32612237
    16 6wdg:P (3.3) BS01 rna ? GO:0002181 ... P0A7R9 32612237
    17 6wdg:Q (3.3) BS01 rna ? GO:0000049 ... P0A7S3 32612237
    18 6wdg:R (3.3) BS01 rna ? GO:0000049 ... P0A7S9 32612237
    19 6wdg:S (3.3) BS01 rna ? GO:0000028 ... P0AG59 32612237
    20 6wdg:T (3.3) BS01 rna ? GO:0000028 ... P0ADZ4 32612237
    21 6wdg:T (3.3) BS02 rna ? GO:0000028 ... P0ADZ4 32612237
    22 6wdg:U (3.3) BS01 rna ? GO:0000028 ... P0A7T3 32612237
    23 6wdg:V (3.3) BS01 rna ? GO:0000028 ... P0AG63 32612237
    24 6wdg:W (3.3) BS01 rna ? GO:0003735 ... P0A7T7 32612237
    25 6wdg:X (3.3) BS01 rna ? GO:0003723 ... P0A7U3 32612237
    26 6wdg:Y (3.3) BS01 rna ? GO:0000028 ... P0A7U7 32612237
    27 6wdg:Z (3.3) BS01 rna ? GO:0000028 ... P68679 32612237
    28 6wdg:Z (3.3) BS02 rna ? GO:0000028 ... P68679 32612237
    29 6wdg:a (3.3) BS01 rna ? GO:0000027 ... P0A7L0 32612237
    30 6wdg:a (3.3) BS02 rna ? GO:0000027 ... P0A7L0 32612237
    31 6wdg:b (3.3) BS01 rna ? GO:0000027 ... P60422 32612237
    32 6wdg:b (3.3) BS02 rna ? GO:0000027 ... P60422 32612237
    33 6wdg:c (3.3) BS01 rna ? GO:0000027 ... P60438 32612237
    34 6wdg:d (3.3) BS01 rna ? GO:0001070 ... P60723 32612237
    35 6wdg:e (3.3) BS01 rna ? GO:0000027 ... P62399 32612237
    36 6wdg:e (3.3) BS02 rna ? GO:0000027 ... P62399 32612237
    37 6wdg:f (3.3) BS01 rna ? GO:0000027 ... P0AG55 32612237
    38 6wdg:g (3.3) BS01 rna ? GO:0002181 ... P0A7R1 32612237
    39 6wdg:h (3.3) BS01 rna ? GO:0003735 ... P0A7J3 32612237
    40 6wdg:i (3.3) BS01 rna ? GO:0000027 ... P0A7J7 32612237
    41 6wdg:j (3.3) BS01 rna ? GO:0002181 ... P0AA10 32612237
    42 6wdg:k (3.3) BS01 rna ? GO:0002181 ... P0ADY3 32612237
    43 6wdg:k (3.3) BS02 rna ? GO:0002181 ... P0ADY3 32612237
    44 6wdg:l (3.3) BS01 rna ? GO:0002181 ... P02413 32612237
    45 6wdg:m (3.3) BS01 rna ? GO:0000027 ... P0ADY7 32612237
    46 6wdg:m (3.3) BS02 rna ? GO:0000027 ... P0ADY7 32612237
    47 6wdg:n (3.3) BS01 rna ? GO:0000027 ... P0AG44 32612237
    48 6wdg:o (3.3) BS01 rna ? GO:0002181 ... P0C018 32612237
    49 6wdg:o (3.3) BS02 rna ? GO:0002181 ... P0C018 32612237
    50 6wdg:p (3.3) BS01 rna ? GO:0000027 ... P0A7K6 32612237
    51 6wdg:p (3.3) BS02 rna ? GO:0000027 ... P0A7K6 32612237
    52 6wdg:q (3.3) BS01 rna ? GO:0000027 ... P0A7L3 32612237
    53 6wdg:r (3.3) BS01 rna ? GO:0002181 ... P0AG48 32612237
    54 6wdg:s (3.3) BS01 rna ? GO:0002181 ... P61175 32612237
    55 6wdg:t (3.3) BS01 rna ? GO:0000027 ... P0ADZ0 32612237
    56 6wdg:u (3.3) BS01 rna ? GO:0000027 ... P60624 32612237
    57 6wdg:v (3.3) BS01 rna ? GO:0000027 ... P68919 32612237
    58 6wdg:v (3.3) BS02 rna ? GO:0000027 ... P68919 32612237
    59 6wdg:w (3.3) BS01 rna ? GO:0003735 ... P0A7L8 32612237
    60 6wdg:w (3.3) BS02 rna ? GO:0003735 ... P0A7L8 32612237
    61 6wdg:x (3.3) BS01 rna ? GO:0000027 ... P0A7M2 32612237
    62 6wdg:y (3.3) BS01 rna ? GO:0000027 ... P0A7M6 32612237
    63 6wdg:z (3.3) BS01 rna ? GO:0000027 ... P0AG51 32612237
    64 6wdg:z (3.3) BS02 rna ? GO:0000027 ... P0AG51 32612237
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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