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BioLiP
Download all results in tab-seperated text for 68 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6vyw:0 (7.0) BS01 rna ? GO:0002181 ... P0AG48 32820061
    2 6vyw:1 (7.0) BS01 rna ? GO:0002181 ... P61175 32820061
    3 6vyw:2 (7.0) BS01 rna ? GO:0000027 ... P0ADZ0 32820061
    4 6vyw:3 (7.0) BS01 rna ? GO:0000027 ... P60624 32820061
    5 6vyw:4 (7.0) BS01 rna ? GO:0000027 ... P68919 32820061
    6 6vyw:AA (7.0) BS01 dna 2.7.7.6 GO:0000345 ... P0A8V2 32820061
    7 6vyw:AA (7.0) BS02 dna 2.7.7.6 GO:0000345 ... P0A8V2 32820061
    8 6vyw:AA (7.0) BS03 rna 2.7.7.6 GO:0000345 ... P0A8V2 32820061
    9 6vyw:AB (7.0) BS01 dna ? GO:0005515 ... P0AFG0 32820061
    10 6vyw:AE (7.0) BS01 dna 2.7.7.6 GO:0000287 ... P0A8T7 32820061
    11 6vyw:AE (7.0) BS02 dna 2.7.7.6 GO:0000287 ... P0A8T7 32820061
    12 6vyw:AE (7.0) BS03 rna 2.7.7.6 GO:0000287 ... P0A8T7 32820061
    13 6vyw:AE (7.0) BS04 MG 2.7.7.6 GO:0000287 ... P0A8T7 32820061
    14 6vyw:AE (7.0) BS05 ZN 2.7.7.6 GO:0000287 ... P0A8T7 32820061
    15 6vyw:AE (7.0) BS06 ZN 2.7.7.6 GO:0000287 ... P0A8T7 32820061
    16 6vyw:C (7.0) BS01 rna ? GO:0002181 ... P0A7T7 32820061
    17 6vyw:E (7.0) BS01 rna ? GO:0000028 ... P0A7U7 32820061
    18 6vyw:F (7.0) BS01 rna ? GO:0000028 ... P68679 32820061
    19 6vyw:G (7.0) BS01 rna ? GO:0000028 ... P0A7V0 32820061
    20 6vyw:I (7.0) BS01 rna ? GO:0000028 ... P0A7V3 32820061
    21 6vyw:J (7.0) BS01 rna ? GO:0000028 ... P0A7V8 32820061
    22 6vyw:K (7.0) BS01 rna ? GO:0000028 ... P0A7W1 32820061
    23 6vyw:L (7.0) BS01 rna ? GO:0003735 ... P02358 32820061
    24 6vyw:M (7.0) BS01 rna ? GO:0000028 ... P02359 32820061
    25 6vyw:M (7.0) BS02 rna ? GO:0000028 ... P02359 32820061
    26 6vyw:N (7.0) BS01 rna ? GO:0000028 ... P0A7W7 32820061
    27 6vyw:O (7.0) BS01 rna ? GO:0000049 ... P0A7X3 32820061
    28 6vyw:P (7.0) BS01 rna ? GO:0000049 ... P0A7R5 32820061
    29 6vyw:Q (7.0) BS01 rna ? GO:0002181 ... P0A7R9 32820061
    30 6vyw:R (7.0) BS01 rna ? GO:0000049 ... P0A7S3 32820061
    31 6vyw:S (7.0) BS01 rna ? GO:0000028 ... P0AG59 32820061
    32 6vyw:T (7.0) BS01 rna ? GO:0000028 ... P0ADZ4 32820061
    33 6vyw:T (7.0) BS02 rna ? GO:0000028 ... P0ADZ4 32820061
    34 6vyw:U (7.0) BS01 rna ? GO:0000028 ... P0A7T3 32820061
    35 6vyw:V (7.0) BS01 rna ? GO:0000028 ... P0AG63 32820061
    36 6vyw:W (7.0) BS01 rna ? GO:0000028 ... P0A7U3 32820061
    37 6vyw:X (7.0) BS01 rna ? GO:0000049 ... P0A7S9 32820061
    38 6vyw:X (7.0) BS02 rna ? GO:0000049 ... P0A7S9 32820061
    39 6vyw:b (7.0) BS01 rna ? GO:0003735 ... P0A7L8 32820061
    40 6vyw:b (7.0) BS02 rna ? GO:0003735 ... P0A7L8 32820061
    41 6vyw:c (7.0) BS01 rna ? GO:0000027 ... P0A7M2 32820061
    42 6vyw:e (7.0) BS01 rna ? GO:0000027 ... P0A7M6 32820061
    43 6vyw:f (7.0) BS01 rna ? GO:0000027 ... P0AG51 32820061
    44 6vyw:f (7.0) BS02 rna ? GO:0000027 ... P0AG51 32820061
    45 6vyw:g (7.0) BS01 rna ? GO:0002181 ... P0A7M9 32820061
    46 6vyw:h (7.0) BS01 rna ? GO:0000027 ... P60422 32820061
    47 6vyw:i (7.0) BS01 rna ? GO:0000027 ... P0A7N4 32820061
    48 6vyw:j (7.0) BS01 rna ? GO:0000027 ... P60438 32820061
    49 6vyw:k (7.0) BS01 rna ? GO:0000027 ... P0A7N9 32820061
    50 6vyw:l (7.0) BS01 rna ? GO:0001070 ... P60723 32820061
    51 6vyw:m (7.0) BS01 rna ? GO:0002181 ... P0A7P5 32820061
    52 6vyw:n (7.0) BS01 rna ? GO:0000027 ... P62399 32820061
    53 6vyw:n (7.0) BS02 rna ? GO:0000027 ... P62399 32820061
    54 6vyw:o (7.0) BS01 rna ? GO:0002181 ... P0A7Q1 32820061
    55 6vyw:p (7.0) BS01 rna ? GO:0000027 ... P0AG55 32820061
    56 6vyw:q (7.0) BS01 rna ? GO:0002181 ... P0A7Q6 32820061
    57 6vyw:r (7.0) BS01 rna ? GO:0002181 ... P0A7R1 32820061
    58 6vyw:s (7.0) BS01 rna ? GO:0002181 ... P0AA10 32820061
    59 6vyw:t (7.0) BS01 rna ? GO:0002181 ... P0ADY3 32820061
    60 6vyw:t (7.0) BS02 rna ? GO:0002181 ... P0ADY3 32820061
    61 6vyw:u (7.0) BS01 rna ? GO:0002181 ... P02413 32820061
    62 6vyw:v (7.0) BS01 rna ? GO:0000027 ... P0ADY7 32820061
    63 6vyw:v (7.0) BS02 rna ? GO:0000027 ... P0ADY7 32820061
    64 6vyw:w (7.0) BS01 rna ? GO:0000027 ... P0AG44 32820061
    65 6vyw:x (7.0) BS01 rna ? GO:0002181 ... P0C018 32820061
    66 6vyw:x (7.0) BS02 rna ? GO:0002181 ... P0C018 32820061
    67 6vyw:y (7.0) BS01 rna ? GO:0000027 ... P0A7K6 32820061
    68 6vyw:z (7.0) BS01 rna ? GO:0000027 ... P0A7L3 32820061
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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