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BioLiP
Download all results in tab-seperated text for 57 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6vwn:A (3.4) BS01 rna ? GO:0000027 ... P60422 32427100
    2 6vwn:A (3.4) BS02 rna ? GO:0000027 ... P60422 32427100
    3 6vwn:AA (3.4) BS01 rna ? GO:0002181 ... P0A7P5 32427100
    4 6vwn:AB (3.4) BS01 rna ? GO:0002181 ... P0A7Q1 32427100
    5 6vwn:AC (3.4) BS01 rna ? GO:0002181 ... P0A7Q6 32427100
    6 6vwn:B (3.4) BS01 rna ? GO:0000027 ... P60438 32427100
    7 6vwn:C (3.4) BS01 rna ? GO:0001070 ... P60723 32427100
    8 6vwn:D (3.4) BS01 rna N/A GO:0003735 ... N/A 32427100
    9 6vwn:D (3.4) BS02 rna N/A GO:0003735 ... N/A 32427100
    10 6vwn:D (3.4) BS03 rna N/A GO:0003735 ... N/A 32427100
    11 6vwn:E (3.4) BS01 rna ? GO:0000027 ... P0AG55 32427100
    12 6vwn:F (3.4) BS01 rna ? GO:0002181 ... P0A7R1 32427100
    13 6vwn:G (3.4) BS01 rna ? GO:0002181 ... P0AA10 32427100
    14 6vwn:I (3.4) BS01 rna ? GO:0002181 ... P0ADY3 32427100
    15 6vwn:I (3.4) BS02 rna ? GO:0002181 ... P0ADY3 32427100
    16 6vwn:J (3.4) BS01 rna ? GO:0002181 ... P02413 32427100
    17 6vwn:K (3.4) BS01 rna ? GO:0000027 ... P0ADY7 32427100
    18 6vwn:K (3.4) BS02 rna ? GO:0000027 ... P0ADY7 32427100
    19 6vwn:L (3.4) BS01 rna ? GO:0000027 ... P0AG44 32427100
    20 6vwn:M (3.4) BS01 rna ? GO:0002181 ... P0C018 32427100
    21 6vwn:M (3.4) BS02 rna ? GO:0002181 ... P0C018 32427100
    22 6vwn:N (3.4) BS01 rna ? GO:0000027 ... P0A7K6 32427100
    23 6vwn:N (3.4) BS02 rna ? GO:0000027 ... P0A7K6 32427100
    24 6vwn:O (3.4) BS01 rna ? GO:0000027 ... P0A7L3 32427100
    25 6vwn:P (3.4) BS01 rna ? GO:0002181 ... P0AG48 32427100
    26 6vwn:Q (3.4) BS01 rna ? GO:0002181 ... P61175 32427100
    27 6vwn:R (3.4) BS01 rna ? GO:0000027 ... P0ADZ0 32427100
    28 6vwn:S (3.4) BS01 rna N/A GO:0003723 ... N/A 32427100
    29 6vwn:T (3.4) BS01 rna ? GO:0000027 ... P68919 32427100
    30 6vwn:U (3.4) BS01 rna ? GO:0000027 ... P0A7L8 32427100
    31 6vwn:V (3.4) BS01 rna ? GO:0000027 ... P0A7M2 32427100
    32 6vwn:W (3.4) BS01 rna ? GO:0000027 ... P0A7M6 32427100
    33 6vwn:X (3.4) BS01 rna ? GO:0000027 ... P0AG51 32427100
    34 6vwn:X (3.4) BS02 rna ? GO:0000027 ... P0AG51 32427100
    35 6vwn:Y (3.4) BS01 rna N/A GO:0003735 ... N/A 32427100
    36 6vwn:Z (3.4) BS01 rna ? GO:0000027 ... P0A7N9 32427100
    37 6vwn:a (3.4) BS01 rna ? GO:0000028 ... P0A7V0 32427100
    38 6vwn:b (3.4) BS01 rna ? GO:0000028 ... P0A7V3 32427100
    39 6vwn:c (3.4) BS01 rna ? GO:0000028 ... P0A7V8 32427100
    40 6vwn:d (3.4) BS01 rna ? GO:0000028 ... P0A7W1 32427100
    41 6vwn:e (3.4) BS01 rna ? GO:0002181 ... P02358 32427100
    42 6vwn:f (3.4) BS01 rna ? GO:0000028 ... P02359 32427100
    43 6vwn:g (3.4) BS01 rna ? GO:0000028 ... P0A7W7 32427100
    44 6vwn:h (3.4) BS01 rna ? GO:0000049 ... P0A7X3 32427100
    45 6vwn:i (3.4) BS01 rna ? GO:0000049 ... P0A7R5 32427100
    46 6vwn:j (3.4) BS01 rna ? GO:0002181 ... P0A7R9 32427100
    47 6vwn:k (3.4) BS01 rna ? GO:0000049 ... P0A7S3 32427100
    48 6vwn:l (3.4) BS01 rna ? GO:0000049 ... P0A7S9 32427100
    49 6vwn:m (3.4) BS01 rna ? GO:0000028 ... P0AG59 32427100
    50 6vwn:n (3.4) BS01 rna ? GO:0000028 ... P0ADZ4 32427100
    51 6vwn:n (3.4) BS02 rna ? GO:0000028 ... P0ADZ4 32427100
    52 6vwn:o (3.4) BS01 rna ? GO:0000028 ... P0A7T3 32427100
    53 6vwn:p (3.4) BS01 rna ? GO:0000028 ... P0AG63 32427100
    54 6vwn:q (3.4) BS01 rna ? GO:0002181 ... P0A7T7 32427100
    55 6vwn:r (3.4) BS01 rna ? GO:0000028 ... P0A7U3 32427100
    56 6vwn:s (3.4) BS01 rna N/A GO:0003723 ... N/A 32427100
    57 6vwn:t (3.4) BS01 rna ? GO:0000028 ... P68679 32427100
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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