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BioLiP
Download all results in tab-seperated text for 86 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6vlz:0 (2.97) BS01 rna ? GO:0003723 ... Q9BYC8 32737313
    2 6vlz:0 (2.97) BS02 ZN ? GO:0003723 ... Q9BYC8 32737313
    3 6vlz:1 (2.97) BS01 rna ? GO:0003735 ... O75394 32737313
    4 6vlz:1 (2.97) BS02 rna ? GO:0003735 ... O75394 32737313
    5 6vlz:2 (2.97) BS01 rna ? GO:0003735 ... Q9BQ48 32737313
    6 6vlz:3 (2.97) BS01 rna ? GO:0003735 ... Q9NZE8 32737313
    7 6vlz:4 (2.97) BS01 rna ? GO:0003735 ... Q9P0J6 32737313
    8 6vlz:4 (2.97) BS02 ZN ? GO:0003735 ... Q9P0J6 32737313
    9 6vlz:5 (2.97) BS01 rna ? GO:0003723 ... Q9BZE1 32737313
    10 6vlz:6 (2.97) BS01 rna ? GO:0005515 ... Q96DV4 32737313
    11 6vlz:6 (2.97) BS02 rna ? GO:0005515 ... Q96DV4 32737313
    12 6vlz:8 (2.97) BS01 rna ? GO:0003723 ... Q9NQ50 32737313
    13 6vlz:9 (2.97) BS01 rna ? GO:0003723 ... Q8IXM3 32737313
    14 6vlz:A0 (2.97) BS01 rna ? GO:0003735 ... P82930 32737313
    15 6vlz:A2 (2.97) BS01 rna ? GO:0001650 ... Q96BP2 32737313
    16 6vlz:A3 (2.97) BS01 rna ? GO:0005515 ... Q9NWT8 32737313
    17 6vlz:AB (2.97) BS01 rna ? GO:0003735 ... Q9Y399 32737313
    18 6vlz:AC (2.97) BS01 rna ? GO:0003723 ... Q96EL2 32737313
    19 6vlz:AD (2.97) BS01 rna ? GO:0003723 ... P82675 32737313
    20 6vlz:AD (2.97) BS02 rna ? GO:0003723 ... P82675 32737313
    21 6vlz:AE (2.97) BS01 rna ? GO:0003735 ... P82932 32737313
    22 6vlz:AF (2.97) BS01 rna ? GO:0000028 ... Q9Y2R9 32737313
    23 6vlz:AG (2.97) BS01 rna ? GO:0003723 ... P82933 32737313
    24 6vlz:AH (2.97) BS01 rna ? GO:0003674 ... P82664 32737313
    25 6vlz:AI (2.97) BS01 rna ? GO:0003723 ... P82912 32737313
    26 6vlz:AJ (2.97) BS01 rna ? GO:0003723 ... O15235 32737313
    27 6vlz:AK (2.97) BS01 rna ? GO:0003723 ... O60783 32737313
    28 6vlz:AL (2.97) BS01 rna ? GO:0003723 ... P82914 32737313
    29 6vlz:AM (2.97) BS01 rna ? GO:0003735 ... Q9Y3D3 32737313
    30 6vlz:AN (2.97) BS01 rna ? GO:0003735 ... Q9Y2R5 32737313
    31 6vlz:AO (2.97) BS01 rna ? GO:0003735 ... Q9Y676 32737313
    32 6vlz:AP (2.97) BS01 rna ? GO:0003735 ... Q9Y3D5 32737313
    33 6vlz:AP (2.97) BS02 ZN ? GO:0003735 ... Q9Y3D5 32737313
    34 6vlz:AQ (2.97) BS01 rna ? GO:0003723 ... P82921 32737313
    35 6vlz:AS (2.97) BS01 rna ? GO:0003723 ... Q9Y3D9 32737313
    36 6vlz:AT (2.97) BS01 rna ? GO:0003735 ... P82663 32737313
    37 6vlz:AU (2.97) BS01 rna ? GO:0003723 ... Q9BYN8 32737313
    38 6vlz:AV (2.97) BS01 rna ? GO:0000049 ... Q92552 32737313
    39 6vlz:AX (2.97) BS01 rna ? GO:0003723 ... P51398 32737313
    40 6vlz:AX (2.97) BS02 GDP ? GO:0003723 ... P51398 32737313
    41 6vlz:AZ (2.97) BS01 rna ? GO:0003735 ... Q9Y291 32737313
    42 6vlz:D (2.97) BS01 rna ? GO:0003723 ... Q5T653 32737313
    43 6vlz:D (2.97) BS02 rna ? GO:0003723 ... Q5T653 32737313
    44 6vlz:E (2.97) BS01 rna ? GO:0003723 ... P09001 32737313
    45 6vlz:F (2.97) BS01 rna ? GO:0003723 ... Q9BYD3 32737313
    46 6vlz:F (2.97) BS02 MG ? GO:0003723 ... Q9BYD3 32737313
    47 6vlz:H (2.97) BS01 rna ? GO:0003723 ... Q9BYD2 32737313
    48 6vlz:I (2.97) BS01 rna ? GO:0003723 ... Q7Z7H8 32737313
    49 6vlz:I (2.97) BS02 peptide ? GO:0003723 ... Q7Z7H8 32737313
    50 6vlz:J (2.97) BS01 rna ? GO:0003723 ... Q9Y3B7 32737313
    51 6vlz:K (2.97) BS01 rna ? GO:0003723 ... Q9BYD1 32737313
    52 6vlz:L (2.97) BS01 rna ? GO:0003723 ... Q6P1L8 32737313
    53 6vlz:L (2.97) BS02 rna ? GO:0003723 ... Q6P1L8 32737313
    54 6vlz:M (2.97) BS01 rna ? GO:0003723 ... Q9P015 32737313
    55 6vlz:N (2.97) BS01 rna ? GO:0003735 ... Q9NX20 32737313
    56 6vlz:O (2.97) BS01 rna ? GO:0003735 ... Q9NRX2 32737313
    57 6vlz:P (2.97) BS01 rna ? GO:0003735 ... A8K9D2 32737313
    58 6vlz:P (2.97) BS02 rna ? GO:0003735 ... A8K9D2 32737313
    59 6vlz:Q (2.97) BS01 rna ? GO:0003735 ... P49406 32737313
    60 6vlz:R (2.97) BS01 rna ? GO:0003723 ... Q9BYC9 32737313
    61 6vlz:S (2.97) BS01 rna ? GO:0003723 ... Q7Z2W9 32737313
    62 6vlz:T (2.97) BS01 rna ? GO:0003735 ... E7ESL0 32737313
    63 6vlz:TA (2.97) BS01 peptide ? GO:0003723 ... P52815 32737313
    64 6vlz:U (2.97) BS01 rna ? GO:0001650 ... Q16540 32737313
    65 6vlz:V (2.97) BS01 rna ? GO:0003723 ... Q96A35 32737313
    66 6vlz:W (2.97) BS01 rna ? GO:0003723 ... Q9P0M9 32737313
    67 6vlz:X (2.97) BS01 rna ? GO:0003723 ... Q13084 32737313
    68 6vlz:Y (2.97) BS01 rna ? GO:0003674 ... Q9HD33 32737313
    69 6vlz:Z (2.97) BS01 rna ? GO:0003735 ... Q8TCC3 32737313
    70 6vlz:a (2.97) BS01 rna ? GO:0003723 ... Q9Y6G3 32737313
    71 6vlz:b (2.97) BS01 rna ? GO:0003735 ... Q8N983 32737313
    72 6vlz:c (2.97) BS01 rna 3.1.26.- GO:0003723 ... Q9H9J2 32737313
    73 6vlz:d (2.97) BS01 rna ? GO:0003723 ... Q9BRJ2 32737313
    74 6vlz:f (2.97) BS01 rna ? GO:0005515 ... Q96GC5 32737313
    75 6vlz:f (2.97) BS02 rna ? GO:0005515 ... Q96GC5 32737313
    76 6vlz:g (2.97) BS01 rna ? GO:0003735 ... Q13405 32737313
    77 6vlz:i (2.97) BS01 rna ? GO:0003735 ... Q4U2R6 32737313
    78 6vlz:j (2.97) BS01 rna ? GO:0003735 ... A8K7J6 32737313
    79 6vlz:l (2.97) BS01 rna ? GO:0003723 ... Q6P161 32737313
    80 6vlz:o (2.97) BS01 rna ? GO:0003735 ... Q9BQC6 32737313
    81 6vlz:q (2.97) BS01 rna ? GO:0005515 ... Q8TAE8 32737313
    82 6vlz:r (2.97) BS01 rna ? GO:0003735 ... Q9NVS2 32737313
    83 6vlz:s (2.97) BS01 rna ? GO:0003723 ... Q9NP92 32737313
    84 6vlz:v (2.97) BS01 rna ? GO:0003723 ... Q96RP9 32737313
    85 6vlz:v (2.97) BS02 rna ? GO:0003723 ... Q96RP9 32737313
    86 6vlz:v (2.97) BS03 MG ? GO:0003723 ... Q96RP9 32737313
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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