Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 102 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6u9d:A (3.194) BS01 TPP 2.2.1.6 GO:0000287 ... P07342 32640464
    2 6u9d:A (3.194) BS02 MG 2.2.1.6 GO:0000287 ... P07342 32640464
    3 6u9d:A (3.194) BS03 FAD 2.2.1.6 GO:0000287 ... P07342 32640464
    4 6u9d:A (3.194) BS04 60G 2.2.1.6 GO:0000287 ... P07342 32640464 BindingDB: Ki=4.4nM
    5 6u9d:A (3.194) BS05 TPP 2.2.1.6 GO:0000287 ... P07342 32640464
    6 6u9d:A (3.194) BS06 60G 2.2.1.6 GO:0000287 ... P07342 32640464 BindingDB: Ki=4.4nM
    7 6u9d:B (3.194) BS01 TPP 2.2.1.6 GO:0000287 ... P07342 32640464
    8 6u9d:B (3.194) BS02 60G 2.2.1.6 GO:0000287 ... P07342 32640464 BindingDB: Ki=4.4nM
    9 6u9d:B (3.194) BS03 TPP 2.2.1.6 GO:0000287 ... P07342 32640464
    10 6u9d:B (3.194) BS04 MG 2.2.1.6 GO:0000287 ... P07342 32640464
    11 6u9d:B (3.194) BS05 FAD 2.2.1.6 GO:0000287 ... P07342 32640464
    12 6u9d:B (3.194) BS06 60G 2.2.1.6 GO:0000287 ... P07342 32640464 BindingDB: Ki=4.4nM
    13 6u9d:C (3.194) BS01 ATP ? GO:0009082 ... P25605 32640464
    14 6u9d:C (3.194) BS02 ATP ? GO:0009082 ... P25605 32640464
    15 6u9d:C (3.194) BS03 ATP ? GO:0009082 ... P25605 32640464
    16 6u9d:D (3.194) BS01 ATP ? GO:0009082 ... P25605 32640464
    17 6u9d:D (3.194) BS02 ATP ? GO:0009082 ... P25605 32640464
    18 6u9d:D (3.194) BS03 ATP ? GO:0009082 ... P25605 32640464
    19 6u9d:E (3.194) BS01 TPP 2.2.1.6 GO:0000287 ... P07342 32640464
    20 6u9d:E (3.194) BS02 MG 2.2.1.6 GO:0000287 ... P07342 32640464
    21 6u9d:E (3.194) BS03 FAD 2.2.1.6 GO:0000287 ... P07342 32640464
    22 6u9d:E (3.194) BS04 60G 2.2.1.6 GO:0000287 ... P07342 32640464 BindingDB: Ki=4.4nM
    23 6u9d:E (3.194) BS05 TPP 2.2.1.6 GO:0000287 ... P07342 32640464
    24 6u9d:E (3.194) BS06 60G 2.2.1.6 GO:0000287 ... P07342 32640464 BindingDB: Ki=4.4nM
    25 6u9d:F (3.194) BS01 TPP 2.2.1.6 GO:0000287 ... P07342 32640464
    26 6u9d:F (3.194) BS02 60G 2.2.1.6 GO:0000287 ... P07342 32640464 BindingDB: Ki=4.4nM
    27 6u9d:F (3.194) BS03 TPP 2.2.1.6 GO:0000287 ... P07342 32640464
    28 6u9d:F (3.194) BS04 MG 2.2.1.6 GO:0000287 ... P07342 32640464
    29 6u9d:F (3.194) BS05 FAD 2.2.1.6 GO:0000287 ... P07342 32640464
    30 6u9d:F (3.194) BS06 60G 2.2.1.6 GO:0000287 ... P07342 32640464 BindingDB: Ki=4.4nM
    31 6u9d:G (3.194) BS01 ATP ? GO:0009082 ... P25605 32640464
    32 6u9d:G (3.194) BS02 ATP ? GO:0009082 ... P25605 32640464
    33 6u9d:G (3.194) BS03 ATP ? GO:0009082 ... P25605 32640464
    34 6u9d:H (3.194) BS01 ATP ? GO:0009082 ... P25605 32640464
    35 6u9d:H (3.194) BS02 ATP ? GO:0009082 ... P25605 32640464
    36 6u9d:H (3.194) BS03 ATP ? GO:0009082 ... P25605 32640464
    37 6u9d:I (3.194) BS01 TPP 2.2.1.6 GO:0000287 ... P07342 32640464
    38 6u9d:I (3.194) BS02 MG 2.2.1.6 GO:0000287 ... P07342 32640464
    39 6u9d:I (3.194) BS03 FAD 2.2.1.6 GO:0000287 ... P07342 32640464
    40 6u9d:I (3.194) BS04 60G 2.2.1.6 GO:0000287 ... P07342 32640464 BindingDB: Ki=4.4nM
    41 6u9d:I (3.194) BS05 TPP 2.2.1.6 GO:0000287 ... P07342 32640464
    42 6u9d:I (3.194) BS06 60G 2.2.1.6 GO:0000287 ... P07342 32640464 BindingDB: Ki=4.4nM
    43 6u9d:J (3.194) BS01 TPP 2.2.1.6 GO:0000287 ... P07342 32640464
    44 6u9d:J (3.194) BS02 60G 2.2.1.6 GO:0000287 ... P07342 32640464 BindingDB: Ki=4.4nM
    45 6u9d:J (3.194) BS03 TPP 2.2.1.6 GO:0000287 ... P07342 32640464
    46 6u9d:J (3.194) BS04 MG 2.2.1.6 GO:0000287 ... P07342 32640464
    47 6u9d:J (3.194) BS05 FAD 2.2.1.6 GO:0000287 ... P07342 32640464
    48 6u9d:J (3.194) BS06 60G 2.2.1.6 GO:0000287 ... P07342 32640464 BindingDB: Ki=4.4nM
    49 6u9d:K (3.194) BS01 ATP ? GO:0009082 ... P25605 32640464
    50 6u9d:K (3.194) BS02 ATP ? GO:0009082 ... P25605 32640464
    51 6u9d:K (3.194) BS03 ATP ? GO:0009082 ... P25605 32640464
    52 6u9d:L (3.194) BS01 ATP ? GO:0009082 ... P25605 32640464
    53 6u9d:L (3.194) BS02 ATP ? GO:0009082 ... P25605 32640464
    54 6u9d:L (3.194) BS03 ATP ? GO:0009082 ... P25605 32640464
    55 6u9d:M (3.194) BS01 TPP 2.2.1.6 GO:0000287 ... P07342 32640464
    56 6u9d:M (3.194) BS02 MG 2.2.1.6 GO:0000287 ... P07342 32640464
    57 6u9d:M (3.194) BS03 FAD 2.2.1.6 GO:0000287 ... P07342 32640464
    58 6u9d:M (3.194) BS04 TPP 2.2.1.6 GO:0000287 ... P07342 32640464
    59 6u9d:M (3.194) BS05 60G 2.2.1.6 GO:0000287 ... P07342 32640464 BindingDB: Ki=4.4nM
    60 6u9d:M (3.194) BS06 60G 2.2.1.6 GO:0000287 ... P07342 32640464 BindingDB: Ki=4.4nM
    61 6u9d:N (3.194) BS01 TPP 2.2.1.6 GO:0000287 ... P07342 32640464
    62 6u9d:N (3.194) BS02 MG 2.2.1.6 GO:0000287 ... P07342 32640464
    63 6u9d:N (3.194) BS03 FAD 2.2.1.6 GO:0000287 ... P07342 32640464
    64 6u9d:N (3.194) BS04 60G 2.2.1.6 GO:0000287 ... P07342 32640464 BindingDB: Ki=4.4nM
    65 6u9d:N (3.194) BS05 60G 2.2.1.6 GO:0000287 ... P07342 32640464 BindingDB: Ki=4.4nM
    66 6u9d:O (3.194) BS01 ATP ? GO:0009082 ... P25605 32640464
    67 6u9d:O (3.194) BS02 ATP ? GO:0009082 ... P25605 32640464
    68 6u9d:O (3.194) BS03 ATP ? GO:0009082 ... P25605 32640464
    69 6u9d:P (3.194) BS01 ATP ? GO:0009082 ... P25605 32640464
    70 6u9d:P (3.194) BS02 ATP ? GO:0009082 ... P25605 32640464
    71 6u9d:P (3.194) BS03 ATP ? GO:0009082 ... P25605 32640464
    72 6u9d:Q (3.194) BS01 TPP 2.2.1.6 GO:0000287 ... P07342 32640464
    73 6u9d:Q (3.194) BS02 MG 2.2.1.6 GO:0000287 ... P07342 32640464
    74 6u9d:Q (3.194) BS03 FAD 2.2.1.6 GO:0000287 ... P07342 32640464
    75 6u9d:Q (3.194) BS04 60G 2.2.1.6 GO:0000287 ... P07342 32640464 BindingDB: Ki=4.4nM
    76 6u9d:Q (3.194) BS05 60G 2.2.1.6 GO:0000287 ... P07342 32640464 BindingDB: Ki=4.4nM
    77 6u9d:R (3.194) BS01 TPP 2.2.1.6 GO:0000287 ... P07342 32640464
    78 6u9d:R (3.194) BS02 60G 2.2.1.6 GO:0000287 ... P07342 32640464 BindingDB: Ki=4.4nM
    79 6u9d:R (3.194) BS03 FAD 2.2.1.6 GO:0000287 ... P07342 32640464
    80 6u9d:R (3.194) BS04 60G 2.2.1.6 GO:0000287 ... P07342 32640464 BindingDB: Ki=4.4nM
    81 6u9d:S (3.194) BS01 ATP ? GO:0009082 ... P25605 32640464
    82 6u9d:S (3.194) BS02 ATP ? GO:0009082 ... P25605 32640464
    83 6u9d:T (3.194) BS01 ATP ? GO:0009082 ... P25605 32640464
    84 6u9d:T (3.194) BS02 ATP ? GO:0009082 ... P25605 32640464
    85 6u9d:T (3.194) BS03 ATP ? GO:0009082 ... P25605 32640464
    86 6u9d:U (3.194) BS01 TPP 2.2.1.6 GO:0000287 ... P07342 32640464
    87 6u9d:U (3.194) BS02 MG 2.2.1.6 GO:0000287 ... P07342 32640464
    88 6u9d:U (3.194) BS03 FAD 2.2.1.6 GO:0000287 ... P07342 32640464
    89 6u9d:U (3.194) BS04 60G 2.2.1.6 GO:0000287 ... P07342 32640464 BindingDB: Ki=4.4nM
    90 6u9d:U (3.194) BS05 TPP 2.2.1.6 GO:0000287 ... P07342 32640464
    91 6u9d:U (3.194) BS06 60G 2.2.1.6 GO:0000287 ... P07342 32640464 BindingDB: Ki=4.4nM
    92 6u9d:V (3.194) BS01 TPP 2.2.1.6 GO:0000287 ... P07342 32640464
    93 6u9d:V (3.194) BS02 60G 2.2.1.6 GO:0000287 ... P07342 32640464 BindingDB: Ki=4.4nM
    94 6u9d:V (3.194) BS03 TPP 2.2.1.6 GO:0000287 ... P07342 32640464
    95 6u9d:V (3.194) BS04 MG 2.2.1.6 GO:0000287 ... P07342 32640464
    96 6u9d:V (3.194) BS05 FAD 2.2.1.6 GO:0000287 ... P07342 32640464
    97 6u9d:V (3.194) BS06 60G 2.2.1.6 GO:0000287 ... P07342 32640464 BindingDB: Ki=4.4nM
    98 6u9d:W (3.194) BS01 ATP ? GO:0009082 ... P25605 32640464
    99 6u9d:W (3.194) BS02 ATP ? GO:0009082 ... P25605 32640464
    100 6u9d:W (3.194) BS03 ATP ? GO:0009082 ... P25605 32640464
    101 6u9d:X (3.194) BS01 ATP ? GO:0009082 ... P25605 32640464
    102 6u9d:X (3.194) BS02 ATP ? GO:0009082 ... P25605 32640464
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218