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BioLiP
Download all results in tab-seperated text for 38 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6tmf:B (2.8) BS01 rna ? GO:0000028 ... A0A218NZR2 32064661
    2 6tmf:C (2.8) BS01 rna ? GO:0003676 ... A0A218NZU7 32064661
    3 6tmf:D (2.8) BS01 rna ? GO:0003735 ... A0A218P0R0 32064661
    4 6tmf:E (2.8) BS01 rna ? GO:0003723 ... A0A218NZV3 32064661
    5 6tmf:F (2.8) BS01 rna ? GO:0003723 ... A0A218NZX1 32064661
    6 6tmf:G (2.8) BS01 rna ? GO:0003723 ... A0A218P4N5 32064661
    7 6tmf:H (2.8) BS01 rna ? GO:0003735 ... A0A218P2W6 32064661
    8 6tmf:I (2.8) BS01 rna ? GO:0000028 ... A0A218P4K4 32064661
    9 6tmf:J (2.8) BS01 rna ? GO:0003735 ... A0A218NZT7 32064661
    10 6tmf:K (2.8) BS01 rna ? GO:0000462 ... A0A218P4F6 32064661
    11 6tmf:L (2.8) BS01 rna ? GO:0000462 ... A0A218NZS6 32064661
    12 6tmf:M (2.8) BS01 rna ? GO:0000049 ... A0A218P3Q8 32064661
    13 6tmf:N (2.8) BS01 rna ? GO:0003735 ... A0A218NZU0 32064661
    14 6tmf:O (2.8) BS01 rna ? GO:0003735 ... A0A218P4I2 32064661
    15 6tmf:P (2.8) BS01 rna ? GO:0003676 ... A0A218NZT2 32064661
    16 6tmf:Q (2.8) BS01 rna ? GO:0003723 ... A0A218NZW1 32064661
    17 6tmf:Q (2.8) BS02 ZN ? GO:0003723 ... A0A218NZW1 32064661
    18 6tmf:R (2.8) BS01 rna ? GO:0003735 ... A0A218P0Q1 32064661
    19 6tmf:S (2.8) BS01 rna ? GO:0003735 ... A0A218NZX3 32064661
    20 6tmf:T (2.8) BS01 rna ? GO:0003735 ... A0A218P2C1 32064661
    21 6tmf:U (2.8) BS01 rna ? GO:0003723 ... A0A218P4M9 32064661
    22 6tmf:V (2.8) BS01 rna ? GO:0000028 ... A0A218P4W7 32064661
    23 6tmf:W (2.8) BS01 ZN ? N/A A0A218P055 32064661
    24 6tmf:W (2.8) BS02 ZN ? N/A A0A218P055 32064661
    25 6tmf:X (2.8) BS01 rna ? GO:0003735 ... A0A218P0B9 32064661
    26 6tmf:Y (2.8) BS01 rna ? GO:0000028 ... A0A218NZS1 32064661
    27 6tmf:Y (2.8) BS02 ZN ? GO:0000028 ... A0A218NZS1 32064661
    28 6tmf:Z (2.8) BS01 rna ? GO:0003735 ... A0A218P0A5 32064661
    29 6tmf:a (2.8) BS01 rna ? GO:0000028 ... A0A218P147 32064661
    30 6tmf:b (2.8) BS01 rna ? GO:0001682 ... A0A218P167 32064661
    31 6tmf:c (2.8) BS01 rna ? GO:0005840 ... A0A218P2S9 32064661
    32 6tmf:d (2.8) BS01 rna ? GO:0005506 ... Q980K5 32064661
    33 6tmf:d (2.8) BS02 SF4 ? GO:0005506 ... Q980K5 32064661
    34 6tmf:d (2.8) BS03 SF4 ? GO:0005506 ... Q980K5 32064661
    35 6tmf:d (2.8) BS04 ANP ? GO:0005506 ... Q980K5 32064661
    36 6tmf:d (2.8) BS05 MG ? GO:0005506 ... Q980K5 32064661
    37 6tmf:d (2.8) BS06 ANP ? GO:0005506 ... Q980K5 32064661
    38 6tmf:d (2.8) BS07 MG ? GO:0005506 ... Q980K5 32064661
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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