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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 192 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6t83:0 (4.0) BS01 rna ? GO:0002181 ... Q3E792 31858614
    2 6t83:1 (4.0) BS01 rna ? GO:0000054 ... P39938 31858614
    3 6t83:2 (4.0) BS01 rna ? GO:0000028 ... P35997 31858614
    4 6t83:3 (4.0) BS01 rna ? GO:0000028 ... P0C0X0 31858614
    5 6t83:4 (4.0) BS01 rna ? GO:0002181 ... P41057 31858614
    6 6t83:5 (4.0) BS01 rna ? GO:0002181 ... P0CX33 31858614
    7 6t83:6 (4.0) BS01 rna ? GO:0000028 ... P05759 31858614
    8 6t83:7 (4.0) BS01 rna ? GO:0001965 ... P38011 31858614
    9 6t83:A (4.0) BS01 rna ? GO:0000448 ... P05740 31858614
    10 6t83:A (4.0) BS02 rna ? GO:0000448 ... P05740 31858614
    11 6t83:Ab (4.0) BS01 rna ? GO:0000028 ... P32905 31858614
    12 6t83:Ay (4.0) BS01 rna ? GO:0002181 ... P0CX45 31858614
    13 6t83:Ay (4.0) BS02 rna ? GO:0002181 ... P0CX45 31858614
    14 6t83:B (4.0) BS01 rna ? GO:0002181 ... P0CX49 31858614
    15 6t83:Ba (4.0) BS01 rna ? GO:0000462 ... P33442 31858614
    16 6t83:By (4.0) BS01 rna ? GO:0000027 ... P14126 31858614
    17 6t83:C (4.0) BS01 rna ? GO:0002181 ... P0CX82 31858614
    18 6t83:C (4.0) BS02 rna ? GO:0002181 ... P0CX82 31858614
    19 6t83:Cb (4.0) BS01 rna ? GO:0000054 ... P25443 31858614
    20 6t83:Cy (4.0) BS01 rna ? GO:0002181 ... P10664 31858614
    21 6t83:Cy (4.0) BS02 rna ? GO:0002181 ... P10664 31858614
    22 6t83:D (4.0) BS01 rna ? GO:0002181 ... P0CX23 31858614
    23 6t83:D (4.0) BS02 rna ? GO:0002181 ... P0CX23 31858614
    24 6t83:Da (4.0) BS01 rna ? GO:0002181 ... P0CX45 31858614
    25 6t83:Da (4.0) BS02 rna ? GO:0002181 ... P0CX45 31858614
    26 6t83:Db (4.0) BS01 rna ? GO:0000054 ... P05750 31858614
    27 6t83:Dy (4.0) BS01 rna ? GO:0000027 ... P26321 31858614
    28 6t83:Dy (4.0) BS02 rna ? GO:0000027 ... P26321 31858614
    29 6t83:E (4.0) BS01 rna ? GO:0002181 ... Q02753 31858614
    30 6t83:E (4.0) BS02 rna ? GO:0002181 ... Q02753 31858614
    31 6t83:Ea (4.0) BS01 rna ? GO:0000027 ... P14126 31858614
    32 6t83:Eb (4.0) BS01 rna ? GO:0002181 ... P0CX35 31858614
    33 6t83:Eb (4.0) BS02 rna ? GO:0002181 ... P0CX35 31858614
    34 6t83:Ey (4.0) BS01 rna ? GO:0000027 ... Q02326 31858614
    35 6t83:F (4.0) BS01 rna ? GO:0002181 ... P05749 31858614
    36 6t83:Fa (4.0) BS01 rna ? GO:0002181 ... P10664 31858614
    37 6t83:Fa (4.0) BS02 rna ? GO:0002181 ... P10664 31858614
    38 6t83:Fb (4.0) BS01 rna ? GO:0000028 ... A0A1L4AA68 31858614
    39 6t83:Fy (4.0) BS01 rna ? GO:0000463 ... P05737 31858614
    40 6t83:Fy (4.0) BS02 rna ? GO:0000463 ... P05737 31858614
    41 6t83:G (4.0) BS01 rna ? GO:0002181 ... P0CX41 31858614
    42 6t83:Ga (4.0) BS01 rna ? GO:0000027 ... P26321 31858614
    43 6t83:Ga (4.0) BS02 rna ? GO:0000027 ... P26321 31858614
    44 6t83:Gb (4.0) BS01 rna ? GO:0000462 ... P0CX37 31858614
    45 6t83:Gy (4.0) BS01 rna ? GO:0000470 ... P17076 31858614
    46 6t83:Gy (4.0) BS02 rna ? GO:0000470 ... P17076 31858614
    47 6t83:H (4.0) BS01 rna ? GO:0002181 ... P04449 31858614
    48 6t83:H (4.0) BS02 rna ? GO:0002181 ... P04449 31858614
    49 6t83:Ha (4.0) BS01 rna ? GO:0000027 ... Q02326 31858614
    50 6t83:Hb (4.0) BS01 rna ? GO:0002181 ... P26786 31858614
    51 6t83:Hy (4.0) BS01 rna ? GO:0002181 ... P05738 31858614
    52 6t83:I (4.0) BS01 rna ? GO:0000027 ... P04456 31858614
    53 6t83:I (4.0) BS02 rna ? GO:0000027 ... P04456 31858614
    54 6t83:Ia (4.0) BS01 rna ? GO:0000463 ... P05737 31858614
    55 6t83:Ia (4.0) BS02 rna ? GO:0000463 ... P05737 31858614
    56 6t83:Ib (4.0) BS01 rna ? GO:0000462 ... P0CX39 31858614
    57 6t83:Ib (4.0) BS02 rna ? GO:0000462 ... P0CX39 31858614
    58 6t83:Iy (4.0) BS01 rna ? GO:0000027 ... P41805 31858614
    59 6t83:Iy (4.0) BS02 rna ? GO:0000027 ... P41805 31858614
    60 6t83:J (4.0) BS01 rna ? GO:0002181 ... P05743 31858614
    61 6t83:J (4.0) BS02 rna ? GO:0002181 ... P05743 31858614
    62 6t83:Ja (4.0) BS01 rna ? GO:0000470 ... P17076 31858614
    63 6t83:Ja (4.0) BS02 rna ? GO:0000470 ... P17076 31858614
    64 6t83:Jb (4.0) BS01 rna ? GO:0000462 ... O13516 31858614
    65 6t83:Jy (4.0) BS01 rna ? GO:0000027 ... P0C0W9 31858614
    66 6t83:Jy (4.0) BS02 rna ? GO:0000027 ... P0C0W9 31858614
    67 6t83:Jy (4.0) BS03 rna ? GO:0000027 ... P0C0W9 31858614
    68 6t83:K (4.0) BS01 rna ? GO:0002181 ... P0C2H6 31858614
    69 6t83:Ka (4.0) BS01 rna ? GO:0002181 ... P05738 31858614
    70 6t83:Kb (4.0) BS01 rna ? GO:0000054 ... Q08745 31858614
    71 6t83:L (4.0) BS01 rna ? GO:0002181 ... P02406 31858614
    72 6t83:La (4.0) BS01 rna ? GO:0000027 ... P41805 31858614
    73 6t83:La (4.0) BS02 rna ? GO:0000027 ... P41805 31858614
    74 6t83:Lb (4.0) BS01 rna ? GO:0000028 ... P0CX47 31858614
    75 6t83:Ly (4.0) BS01 rna ? GO:0002181 ... Q12690 31858614
    76 6t83:Ly (4.0) BS02 rna ? GO:0002181 ... Q12690 31858614
    77 6t83:M (4.0) BS01 rna ? GO:0002181 ... P05747 31858614
    78 6t83:Ma (4.0) BS01 rna ? GO:0000027 ... P0C0W9 31858614
    79 6t83:Ma (4.0) BS02 rna ? GO:0000027 ... P0C0W9 31858614
    80 6t83:Ma (4.0) BS03 rna ? GO:0000027 ... P0C0W9 31858614
    81 6t83:Mb (4.0) BS01 rna ? GO:0000028 ... P48589 31858614
    82 6t83:My (4.0) BS01 rna ? GO:0000027 ... P36105 31858614
    83 6t83:N (4.0) BS01 rna ? GO:0002181 ... P14120 31858614
    84 6t83:Na (4.0) BS01 rna ? GO:0002181 ... Q12690 31858614
    85 6t83:Na (4.0) BS02 rna ? GO:0002181 ... Q12690 31858614
    86 6t83:Nb (4.0) BS01 rna ? GO:0000462 ... P05756 31858614
    87 6t83:Nb (4.0) BS02 rna ? GO:0000462 ... P05756 31858614
    88 6t83:Ny (4.0) BS01 rna ? GO:0002181 ... P05748 31858614
    89 6t83:Ny (4.0) BS02 rna ? GO:0002181 ... P05748 31858614
    90 6t83:O (4.0) BS01 rna ? GO:0002181 ... P0C2H8 31858614
    91 6t83:Oa (4.0) BS01 rna ? GO:0000027 ... P36105 31858614
    92 6t83:Ob (4.0) BS01 rna ? GO:0000028 ... P06367 31858614
    93 6t83:Oy (4.0) BS01 rna ? GO:0000470 ... P26784 31858614
    94 6t83:P (4.0) BS01 rna ? GO:0002181 ... P38061 31858614
    95 6t83:Pa (4.0) BS01 rna ? GO:0002181 ... P05748 31858614
    96 6t83:Pa (4.0) BS02 rna ? GO:0002181 ... P05748 31858614
    97 6t83:Pb (4.0) BS01 rna ? GO:0000028 ... Q01855 31858614
    98 6t83:Py (4.0) BS01 rna ? GO:0000448 ... P05740 31858614
    99 6t83:Py (4.0) BS02 rna ? GO:0000448 ... P05740 31858614
    100 6t83:Q (4.0) BS01 rna ? GO:0000027 ... P05744 31858614
    101 6t83:Qa (4.0) BS01 rna ? GO:0000470 ... P26784 31858614
    102 6t83:Qb (4.0) BS01 rna ? GO:0000462 ... P0CX51 31858614
    103 6t83:Qy (4.0) BS01 rna ? GO:0002181 ... P0CX49 31858614
    104 6t83:R (4.0) BS01 rna ? GO:0002181 ... P87262 31858614
    105 6t83:Rb (4.0) BS01 rna ? GO:0000028 ... P14127 31858614
    106 6t83:Ry (4.0) BS01 rna ? GO:0002181 ... P0CX82 31858614
    107 6t83:Ry (4.0) BS02 rna ? GO:0002181 ... P0CX82 31858614
    108 6t83:S (4.0) BS01 rna ? GO:0000463 ... P0CX84 31858614
    109 6t83:S (4.0) BS02 rna ? GO:0000463 ... P0CX84 31858614
    110 6t83:Sb (4.0) BS01 rna ? GO:0000054 ... P0CX55 31858614
    111 6t83:Sy (4.0) BS01 rna ? GO:0002181 ... P0CX23 31858614
    112 6t83:Sy (4.0) BS02 rna ? GO:0002181 ... P0CX23 31858614
    113 6t83:T (4.0) BS01 rna ? GO:0002181 ... P05745 31858614
    114 6t83:Tb (4.0) BS01 rna ? GO:0000028 ... P07280 31858614
    115 6t83:Ty (4.0) BS01 rna ? GO:0002181 ... Q02753 31858614
    116 6t83:Ty (4.0) BS02 rna ? GO:0002181 ... Q02753 31858614
    117 6t83:U (4.0) BS01 rna ? GO:0000448 ... P49166 31858614
    118 6t83:U (4.0) BS02 rna ? GO:0000448 ... P49166 31858614
    119 6t83:Ub (4.0) BS01 rna ? GO:0000462 ... P38701 31858614
    120 6t83:Uy (4.0) BS01 rna ? GO:0002181 ... P05749 31858614
    121 6t83:V (4.0) BS01 rna ? GO:0002181 ... P49167 31858614
    122 6t83:Vy (4.0) BS01 rna ? GO:0002181 ... P0CX41 31858614
    123 6t83:W (4.0) BS01 rna ? GO:0002181 ... P04650 31858614
    124 6t83:W (4.0) BS02 rna ? GO:0002181 ... P04650 31858614
    125 6t83:Wb (4.0) BS01 rna ? GO:0002181 ... P0C0W1 31858614
    126 6t83:Wy (4.0) BS01 rna ? GO:0002181 ... P04449 31858614
    127 6t83:Wy (4.0) BS02 rna ? GO:0002181 ... P04449 31858614
    128 6t83:X (4.0) BS01 rna ? GO:0000027 ... P0CH08 31858614
    129 6t83:Xb (4.0) BS01 rna ? GO:0000462 ... P0CX29 31858614
    130 6t83:Xy (4.0) BS01 rna ? GO:0000027 ... P04456 31858614
    131 6t83:Xy (4.0) BS02 rna ? GO:0000027 ... P04456 31858614
    132 6t83:Yb (4.0) BS01 rna ? GO:0000462 ... P0CX31 31858614
    133 6t83:Yy (4.0) BS01 rna ? GO:0002181 ... P05743 31858614
    134 6t83:Yy (4.0) BS02 rna ? GO:0002181 ... P05743 31858614
    135 6t83:Z (4.0) BS01 rna ? GO:0002181 ... P0CX27 31858614
    136 6t83:Z (4.0) BS02 rna ? GO:0002181 ... P0CX27 31858614
    137 6t83:Zb (4.0) BS01 rna ? GO:0002181 ... Q3E792 31858614
    138 6t83:Zb (4.0) BS02 rna ? GO:0002181 ... Q3E792 31858614
    139 6t83:Zy (4.0) BS01 rna ? GO:0002181 ... P0C2H6 31858614
    140 6t83:aa (4.0) BS01 rna ? GO:0002181 ... P0CX25 31858614
    141 6t83:ab (4.0) BS01 rna ? GO:0000054 ... P39938 31858614
    142 6t83:ay (4.0) BS01 rna ? GO:0002181 ... P02406 31858614
    143 6t83:b (4.0) BS01 rna ? GO:0000028 ... P32905 31858614
    144 6t83:ba (4.0) BS01 rna ? GO:0000027 ... P05317 31858614
    145 6t83:bb (4.0) BS01 rna ? GO:0000028 ... P35997 31858614
    146 6t83:by (4.0) BS01 rna ? GO:0002181 ... P05747 31858614
    147 6t83:c (4.0) BS01 rna ? GO:0000462 ... P33442 31858614
    148 6t83:c (4.0) BS02 rna ? GO:0000462 ... P33442 31858614
    149 6t83:cb (4.0) BS01 rna ? GO:0000028 ... P0C0X0 31858614
    150 6t83:cy (4.0) BS01 rna ? GO:0002181 ... P14120 31858614
    151 6t83:d (4.0) BS01 rna ? GO:0000054 ... P25443 31858614
    152 6t83:db (4.0) BS01 rna ? GO:0002181 ... P41057 31858614
    153 6t83:dy (4.0) BS01 rna ? GO:0002181 ... P0C2H8 31858614
    154 6t83:e (4.0) BS01 rna ? GO:0000054 ... P05750 31858614
    155 6t83:eb (4.0) BS01 rna ? GO:0002181 ... P0CX33 31858614
    156 6t83:ey (4.0) BS01 rna ? GO:0002181 ... P38061 31858614
    157 6t83:f (4.0) BS01 rna ? GO:0002181 ... P0CX35 31858614
    158 6t83:fb (4.0) BS01 rna ? GO:0000028 ... P05759 31858614
    159 6t83:fy (4.0) BS01 rna ? GO:0000027 ... P05744 31858614
    160 6t83:g (4.0) BS01 rna ? GO:0000028 ... A0A1L4AA68 31858614
    161 6t83:gb (4.0) BS01 rna ? GO:0001965 ... P38011 31858614
    162 6t83:gy (4.0) BS01 rna ? GO:0002181 ... P87262 31858614
    163 6t83:h (4.0) BS01 rna ? GO:0000462 ... P0CX37 31858614
    164 6t83:hb (4.0) BS01 rna ? GO:0000463 ... P0CX84 31858614
    165 6t83:hb (4.0) BS02 rna ? GO:0000463 ... P0CX84 31858614
    166 6t83:i (4.0) BS01 rna ? GO:0002181 ... P26786 31858614
    167 6t83:ib (4.0) BS01 rna ? GO:0002181 ... P05745 31858614
    168 6t83:j (4.0) BS01 rna ? GO:0000462 ... P0CX39 31858614
    169 6t83:j (4.0) BS02 rna ? GO:0000462 ... P0CX39 31858614
    170 6t83:jb (4.0) BS01 rna ? GO:0000448 ... P49166 31858614
    171 6t83:jb (4.0) BS02 rna ? GO:0000448 ... P49166 31858614
    172 6t83:k (4.0) BS01 rna ? GO:0000462 ... O13516 31858614
    173 6t83:kb (4.0) BS01 rna ? GO:0002181 ... P49167 31858614
    174 6t83:l (4.0) BS01 rna ? GO:0000054 ... Q08745 31858614
    175 6t83:lb (4.0) BS01 rna ? GO:0002181 ... P04650 31858614
    176 6t83:lb (4.0) BS02 rna ? GO:0002181 ... P04650 31858614
    177 6t83:m (4.0) BS01 rna ? GO:0000028 ... P0CX47 31858614
    178 6t83:mb (4.0) BS01 rna ? GO:0000027 ... P0CH08 31858614
    179 6t83:n (4.0) BS01 rna ? GO:0000028 ... P48589 31858614
    180 6t83:o (4.0) BS01 rna ? GO:0000462 ... P05756 31858614
    181 6t83:ob (4.0) BS01 rna ? GO:0002181 ... P0CX27 31858614
    182 6t83:p (4.0) BS01 rna ? GO:0000028 ... P06367 31858614
    183 6t83:pb (4.0) BS01 rna ? GO:0002181 ... P0CX25 31858614
    184 6t83:q (4.0) BS01 rna ? GO:0000028 ... Q01855 31858614
    185 6t83:r (4.0) BS01 rna ? GO:0000462 ... P0CX51 31858614
    186 6t83:s (4.0) BS01 rna ? GO:0000028 ... P14127 31858614
    187 6t83:t (4.0) BS01 rna ? GO:0000054 ... P0CX55 31858614
    188 6t83:u (4.0) BS01 rna ? GO:0000028 ... P07280 31858614
    189 6t83:v (4.0) BS01 rna ? GO:0000462 ... P38701 31858614
    190 6t83:x (4.0) BS01 rna ? GO:0002181 ... P0C0W1 31858614
    191 6t83:y (4.0) BS01 rna ? GO:0000462 ... P0CX29 31858614
    192 6t83:z (4.0) BS01 rna ? GO:0000462 ... P0CX31 31858614
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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