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BioLiP
Download all results in tab-seperated text for 67 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6t59:1 (3.11) BS01 rna N/A GO:0005525 ... N/A 31727855
    2 6t59:A3 (3.11) BS01 rna ? GO:0002181 ... G1TT27 31727855
    3 6t59:B3 (3.11) BS01 rna ? GO:0003723 ... G1TL06 31727855
    4 6t59:C3 (3.11) BS01 rna N/A GO:0003735 ... N/A 31727855
    5 6t59:C3 (3.11) BS02 rna N/A GO:0003735 ... N/A 31727855
    6 6t59:D3 (3.11) BS01 rna ? GO:0000027 ... P19949 31727855
    7 6t59:D3 (3.11) BS02 rna ? GO:0000027 ... P19949 31727855
    8 6t59:E3 (3.11) BS01 rna ? GO:0000027 ... G1SKF7 31727855
    9 6t59:F3 (3.11) BS01 rna ? GO:0000463 ... G1TUB1 31727855
    10 6t59:F3 (3.11) BS02 rna ? GO:0000463 ... G1TUB1 31727855
    11 6t59:G3 (3.11) BS01 rna N/A GO:0042254 ... N/A 31727855
    12 6t59:G3 (3.11) BS02 rna N/A GO:0042254 ... N/A 31727855
    13 6t59:H3 (3.11) BS01 rna ? GO:0002181 ... G1SWI6 31727855
    14 6t59:I3 (3.11) BS01 rna ? GO:0000027 ... B7NZQ2 31727855
    15 6t59:I3 (3.11) BS02 rna ? GO:0000027 ... B7NZQ2 31727855
    16 6t59:J3 (3.11) BS01 rna ? GO:0003723 ... G1TUB8 31727855
    17 6t59:J3 (3.11) BS02 rna ? GO:0003723 ... G1TUB8 31727855
    18 6t59:L3 (3.11) BS01 rna N/A GO:0003735 ... N/A 31727855
    19 6t59:M3 (3.11) BS01 rna ? GO:0003723 ... G1SZ12 31727855
    20 6t59:N3 (3.11) BS01 rna ? GO:0002181 ... G1T0C1 31727855
    21 6t59:N3 (3.11) BS02 rna ? GO:0002181 ... G1T0C1 31727855
    22 6t59:O3 (3.11) BS01 rna N/A GO:0003735 ... N/A 31727855
    23 6t59:P3 (3.11) BS01 rna ? GO:0002181 ... G1SCJ6 31727855
    24 6t59:P3 (3.11) BS02 rna ? GO:0002181 ... G1SCJ6 31727855
    25 6t59:Q3 (3.11) BS01 rna N/A GO:0003735 ... N/A 31727855
    26 6t59:R3 (3.11) BS01 rna N/A GO:0003723 ... N/A 31727855
    27 6t59:R3 (3.11) BS02 peptide N/A GO:0003723 ... N/A 31727855
    28 6t59:S3 (3.11) BS01 rna N/A GO:0003735 ... N/A 31727855
    29 6t59:S3 (3.11) BS02 rna N/A GO:0003735 ... N/A 31727855
    30 6t59:T3 (3.11) BS01 rna ? GO:0003735 ... G1SHQ2 31727855
    31 6t59:T3 (3.11) BS02 rna ? GO:0003735 ... G1SHQ2 31727855
    32 6t59:U3 (3.11) BS01 rna N/A GO:0003735 ... N/A 31727855
    33 6t59:U3 (3.11) BS02 peptide N/A GO:0003735 ... N/A 31727855
    34 6t59:V3 (3.11) BS01 rna ? GO:0000122 ... G1T6D1 31727855
    35 6t59:W3 (3.11) BS01 rna ? GO:0000027 ... G1SE28 31727855
    36 6t59:X3 (3.11) BS01 rna ? GO:0000027 ... G1SE76 31727855
    37 6t59:X3 (3.11) BS02 rna ? GO:0000027 ... G1SE76 31727855
    38 6t59:Y3 (3.11) BS01 rna ? GO:0002181 ... G1SQH0 31727855
    39 6t59:Y3 (3.11) BS02 rna ? GO:0002181 ... G1SQH0 31727855
    40 6t59:Z3 (3.11) BS01 rna ? GO:0003735 ... G1TXF6 31727855
    41 6t59:a3 (3.11) BS01 rna ? GO:0003735 ... G1SNY0 31727855
    42 6t59:b3 (3.11) BS01 rna ? GO:0002181 ... G1SGR6 31727855
    43 6t59:c3 (3.11) BS01 rna ? GO:0002181 ... G1TDL2 31727855
    44 6t59:d3 (3.11) BS01 rna ? GO:0002181 ... G1SHG0 31727855
    45 6t59:e3 (3.11) BS01 rna ? GO:0003735 ... G1TUN8 31727855
    46 6t59:f3 (3.11) BS01 rna ? GO:0000049 ... G1SF08 31727855
    47 6t59:g3 (3.11) BS01 rna ? GO:0003735 ... G1TXG5 31727855
    48 6t59:g3 (3.11) BS02 ZN ? GO:0003735 ... G1TXG5 31727855
    49 6t59:g3 (3.11) BS03 MG ? GO:0003735 ... G1TXG5 31727855
    50 6t59:h3 (3.11) BS01 rna ? GO:0000463 ... G1SIT5 31727855
    51 6t59:h3 (3.11) BS02 rna ? GO:0000463 ... G1SIT5 31727855
    52 6t59:i3 (3.11) BS01 rna ? GO:0002181 ... G1TTQ5 31727855
    53 6t59:j3 (3.11) BS01 rna ? GO:0003723 ... U3KPD5 31727855
    54 6t59:j3 (3.11) BS02 rna ? GO:0003723 ... U3KPD5 31727855
    55 6t59:j3 (3.11) BS03 ZN ? GO:0003723 ... U3KPD5 31727855
    56 6t59:k3 (3.11) BS01 rna ? GO:0003735 ... G1U001 31727855
    57 6t59:l3 (3.11) BS01 rna ? GO:0003735 ... G1TTN1 31727855
    58 6t59:l3 (3.11) BS02 rna ? GO:0003735 ... G1TTN1 31727855
    59 6t59:m3 (3.11) BS01 rna N/A GO:0003735 ... N/A 31727855
    60 6t59:m3 (3.11) BS02 ZN N/A GO:0003735 ... N/A 31727855
    61 6t59:o3 (3.11) BS01 rna ? GO:0003735 ... G1T040 31727855
    62 6t59:o3 (3.11) BS02 ZN ? GO:0003735 ... G1T040 31727855
    63 6t59:p3 (3.11) BS01 rna ? GO:0003735 ... G1SY53 31727855
    64 6t59:p3 (3.11) BS02 ZN ? GO:0003735 ... G1SY53 31727855
    65 6t59:r3 (3.11) BS01 rna ? GO:0003735 ... G1U7L1 31727855
    66 6t59:s3 (3.11) BS01 rna N/A GO:0042254 ... N/A 31727855
    67 6t59:t3 (3.11) BS01 rna ? GO:0003723 ... G1SMR7 31727855
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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