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BioLiP
Download all results in tab-seperated text for 114 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6t4q:LA (2.6) BS01 rna ? GO:0002181 ... P0CX45 31858614
    2 6t4q:LA (2.6) BS02 rna ? GO:0002181 ... P0CX45 31858614
    3 6t4q:LA (2.6) BS03 MG ? GO:0002181 ... P0CX45 31858614
    4 6t4q:LA (2.6) BS04 MG ? GO:0002181 ... P0CX45 31858614
    5 6t4q:LB (2.6) BS01 rna ? GO:0000027 ... P14126 31858614
    6 6t4q:LB (2.6) BS02 MG ? GO:0000027 ... P14126 31858614
    7 6t4q:LC (2.6) BS01 rna ? GO:0002181 ... P10664 31858614
    8 6t4q:LC (2.6) BS02 rna ? GO:0002181 ... P10664 31858614
    9 6t4q:LD (2.6) BS01 rna ? GO:0000027 ... P26321 31858614
    10 6t4q:LD (2.6) BS02 rna ? GO:0000027 ... P26321 31858614
    11 6t4q:LE (2.6) BS01 rna ? GO:0000027 ... P05739 31858614
    12 6t4q:LF (2.6) BS01 rna ? GO:0000463 ... P05737 31858614
    13 6t4q:LF (2.6) BS02 rna ? GO:0000463 ... P05737 31858614
    14 6t4q:LG (2.6) BS01 rna ? GO:0000470 ... P17076 31858614
    15 6t4q:LG (2.6) BS02 rna ? GO:0000470 ... P17076 31858614
    16 6t4q:LH (2.6) BS01 rna ? GO:0002181 ... P05738 31858614
    17 6t4q:LI (2.6) BS01 rna ? GO:0000027 ... P41805 31858614
    18 6t4q:LI (2.6) BS02 rna ? GO:0000027 ... P41805 31858614
    19 6t4q:LI (2.6) BS03 rna ? GO:0000027 ... P41805 31858614
    20 6t4q:LJ (2.6) BS01 rna ? GO:0000027 ... Q3E757 31858614
    21 6t4q:LJ (2.6) BS02 rna ? GO:0000027 ... Q3E757 31858614
    22 6t4q:LL (2.6) BS01 rna ? GO:0002181 ... Q12690 31858614
    23 6t4q:LL (2.6) BS02 rna ? GO:0002181 ... Q12690 31858614
    24 6t4q:LM (2.6) BS01 rna ? GO:0000027 ... P36105 31858614
    25 6t4q:LN (2.6) BS01 rna ? GO:0002181 ... P05748 31858614
    26 6t4q:LN (2.6) BS02 rna ? GO:0002181 ... P05748 31858614
    27 6t4q:LN (2.6) BS03 MG ? GO:0002181 ... P05748 31858614
    28 6t4q:LO (2.6) BS01 rna ? GO:0000470 ... P26784 31858614
    29 6t4q:LP (2.6) BS01 rna ? GO:0000448 ... P05740 31858614
    30 6t4q:LP (2.6) BS02 rna ? GO:0000448 ... P05740 31858614
    31 6t4q:LQ (2.6) BS01 rna ? GO:0002181 ... P0CX49 31858614
    32 6t4q:LR (2.6) BS01 rna ? GO:0002181 ... P0CX82 31858614
    33 6t4q:LR (2.6) BS02 rna ? GO:0002181 ... P0CX82 31858614
    34 6t4q:LS (2.6) BS01 rna ? GO:0002181 ... P0CX23 31858614
    35 6t4q:LS (2.6) BS02 rna ? GO:0002181 ... P0CX23 31858614
    36 6t4q:LT (2.6) BS01 rna ? GO:0002181 ... Q02753 31858614
    37 6t4q:LT (2.6) BS02 rna ? GO:0002181 ... Q02753 31858614
    38 6t4q:LU (2.6) BS01 rna ? GO:0003735 ... P05749 31858614
    39 6t4q:LV (2.6) BS01 rna ? GO:0002181 ... P0CX41 31858614
    40 6t4q:LW (2.6) BS01 rna ? N/A P04449 31858614
    41 6t4q:LW (2.6) BS02 rna ? N/A P04449 31858614
    42 6t4q:LX (2.6) BS01 rna ? GO:0003735 ... P04456 31858614
    43 6t4q:LX (2.6) BS02 rna ? GO:0003735 ... P04456 31858614
    44 6t4q:LY (2.6) BS01 rna ? GO:0002181 ... P05743 31858614
    45 6t4q:LY (2.6) BS02 rna ? GO:0002181 ... P05743 31858614
    46 6t4q:LZ (2.6) BS01 rna ? GO:0002181 ... P0C2H6 31858614
    47 6t4q:La (2.6) BS01 rna ? GO:0002181 ... P02406 31858614
    48 6t4q:Lb (2.6) BS01 rna ? GO:0002181 ... P05747 31858614
    49 6t4q:Lc (2.6) BS01 rna ? GO:0002181 ... P14120 31858614
    50 6t4q:Ld (2.6) BS01 rna ? GO:0002181 ... P0C2H8 31858614
    51 6t4q:Le (2.6) BS01 rna ? GO:0002181 ... P38061 31858614
    52 6t4q:Le (2.6) BS02 MG ? GO:0002181 ... P38061 31858614
    53 6t4q:Lf (2.6) BS01 rna ? GO:0000027 ... P05744 31858614
    54 6t4q:Lg (2.6) BS01 rna ? GO:0002181 ... P87262 31858614
    55 6t4q:Lg (2.6) BS02 MG ? GO:0002181 ... P87262 31858614
    56 6t4q:Lh (2.6) BS01 rna ? GO:0000463 ... P0CX84 31858614
    57 6t4q:Lh (2.6) BS02 rna ? GO:0000463 ... P0CX84 31858614
    58 6t4q:Li (2.6) BS01 rna ? GO:0002181 ... P05745 31858614
    59 6t4q:Lj (2.6) BS01 rna ? GO:0000448 ... P49166 31858614
    60 6t4q:Lj (2.6) BS02 rna ? GO:0000448 ... P49166 31858614
    61 6t4q:Lj (2.6) BS03 ZN ? GO:0000448 ... P49166 31858614
    62 6t4q:Lk (2.6) BS01 rna ? GO:0002181 ... P49167 31858614
    63 6t4q:Ll (2.6) BS01 rna ? GO:0002181 ... P04650 31858614
    64 6t4q:Ll (2.6) BS02 rna ? GO:0002181 ... P04650 31858614
    65 6t4q:Lm (2.6) BS01 rna ? GO:0003735 ... P0CH08 31858614
    66 6t4q:Lm (2.6) BS02 ZN ? GO:0003735 ... P0CH08 31858614
    67 6t4q:Lo (2.6) BS01 rna ? GO:0002181 ... P0CX27 31858614
    68 6t4q:Lo (2.6) BS02 rna ? GO:0002181 ... P0CX27 31858614
    69 6t4q:Lo (2.6) BS03 ZN ? GO:0002181 ... P0CX27 31858614
    70 6t4q:Lp (2.6) BS01 rna ? GO:0002181 ... P0CX25 31858614
    71 6t4q:Lp (2.6) BS02 ZN ? GO:0002181 ... P0CX25 31858614
    72 6t4q:SA (2.6) BS01 rna ? GO:0003735 ... P32905 31858614
    73 6t4q:SB (2.6) BS01 rna ? GO:0000462 ... P33442 31858614
    74 6t4q:SB (2.6) BS02 rna ? GO:0000462 ... P33442 31858614
    75 6t4q:SC (2.6) BS01 rna ? GO:0003723 ... P25443 31858614
    76 6t4q:SD (2.6) BS01 rna ? GO:0000054 ... P05750 31858614
    77 6t4q:SE (2.6) BS01 rna ? GO:0002181 ... P0CX35 31858614
    78 6t4q:SF (2.6) BS01 rna ? GO:0000028 ... A0A1L4AA68 31858614
    79 6t4q:SF (2.6) BS02 rna ? GO:0000028 ... A0A1L4AA68 31858614
    80 6t4q:SF (2.6) BS03 rna ? GO:0000028 ... A0A1L4AA68 31858614
    81 6t4q:SF (2.6) BS04 MG ? GO:0000028 ... A0A1L4AA68 31858614
    82 6t4q:SG (2.6) BS01 rna ? GO:0000462 ... P0CX37 31858614
    83 6t4q:SH (2.6) BS01 rna ? GO:0002181 ... P26786 31858614
    84 6t4q:SI (2.6) BS01 rna ? GO:0000462 ... P0CX39 31858614
    85 6t4q:SI (2.6) BS02 rna ? GO:0000462 ... P0CX39 31858614
    86 6t4q:SJ (2.6) BS01 rna ? GO:0000462 ... O13516 31858614
    87 6t4q:SK (2.6) BS01 rna ? N/A Q08745 31858614
    88 6t4q:SL (2.6) BS01 rna ? GO:0000028 ... P0CX47 31858614
    89 6t4q:SM (2.6) BS01 rna ? GO:0003735 ... P48589 31858614
    90 6t4q:SN (2.6) BS01 rna ? GO:0000462 ... P05756 31858614
    91 6t4q:SN (2.6) BS02 rna ? GO:0000462 ... P05756 31858614
    92 6t4q:SO (2.6) BS01 rna ? GO:0000028 ... P39516 31858614
    93 6t4q:SP (2.6) BS01 rna ? GO:0003723 ... Q01855 31858614
    94 6t4q:SQ (2.6) BS01 rna ? GO:0000462 ... P0CX51 31858614
    95 6t4q:SR (2.6) BS01 rna ? GO:0000028 ... P02407 31858614
    96 6t4q:SS (2.6) BS01 rna ? GO:0000054 ... P0CX55 31858614
    97 6t4q:ST (2.6) BS01 rna ? GO:0000028 ... P07280 31858614
    98 6t4q:SU (2.6) BS01 rna ? GO:0003723 ... P38701 31858614
    99 6t4q:SV (2.6) BS01 rna ? GO:0000447 ... P0C0V8 31858614
    100 6t4q:SW (2.6) BS01 rna ? GO:0002181 ... P0C0W1 31858614
    101 6t4q:SX (2.6) BS01 rna ? GO:0000462 ... P0CX29 31858614
    102 6t4q:SY (2.6) BS01 rna ? GO:0000462 ... P0CX31 31858614
    103 6t4q:SZ (2.6) BS01 rna ? N/A Q3E792 31858614
    104 6t4q:SZ (2.6) BS02 rna ? N/A Q3E792 31858614
    105 6t4q:Sa (2.6) BS01 rna ? GO:0003735 ... P39939 31858614
    106 6t4q:Sa (2.6) BS02 rna ? GO:0003735 ... P39939 31858614
    107 6t4q:Sb (2.6) BS01 rna ? GO:0000028 ... P35997 31858614
    108 6t4q:Sc (2.6) BS01 rna ? GO:0000028 ... Q3E7X9 31858614
    109 6t4q:Sd (2.6) BS01 rna ? GO:0002181 ... P41057 31858614
    110 6t4q:Sd (2.6) BS02 ZN ? GO:0002181 ... P41057 31858614
    111 6t4q:Se (2.6) BS01 rna ? GO:0002181 ... P0CX33 31858614
    112 6t4q:Sf (2.6) BS01 rna ? GO:0003735 ... P05759 31858614
    113 6t4q:Sf (2.6) BS02 ZN ? GO:0003735 ... P05759 31858614
    114 6t4q:Sg (2.6) BS01 rna ? GO:0001965 ... P38011 31858614
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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