Home Research COVID-19 Services Publications People Teaching Job Opening News Forum Lab Only
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 67 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6szs:0 (3.06) BS01 rna ? GO:0000027 ... P0A7N4 31776341
    2 6szs:1 (3.06) BS01 rna ? GO:0000027 ... P0A7N9 31776341
    3 6szs:2 (3.06) BS01 rna ? GO:0002181 ... P0A7P5 31776341
    4 6szs:3 (3.06) BS01 rna ? GO:0002181 ... P0A7Q1 31776341
    5 6szs:4 (3.06) BS01 rna ? GO:0002181 ... P0A7Q6 31776341
    6 6szs:5 (3.06) BS01 rna ? GO:0002181 ... P0A7M9 31776341
    7 6szs:5 (3.06) BS02 rna ? GO:0002181 ... P0A7M9 31776341
    8 6szs:C (3.06) BS01 rna ? GO:0000027 ... P60422 31776341
    9 6szs:C (3.06) BS02 rna ? GO:0000027 ... P60422 31776341
    10 6szs:D (3.06) BS01 rna ? GO:0000027 ... P60438 31776341
    11 6szs:E (3.06) BS01 rna ? GO:0001070 ... P60723 31776341
    12 6szs:F (3.06) BS01 rna ? GO:0000027 ... P62399 31776341
    13 6szs:F (3.06) BS02 rna ? GO:0000027 ... P62399 31776341
    14 6szs:F (3.06) BS03 rna ? GO:0000027 ... P62399 31776341
    15 6szs:G (3.06) BS01 rna ? GO:0000027 ... P0AG55 31776341
    16 6szs:H (3.06) BS01 rna ? GO:0002181 ... P0A7R1 31776341
    17 6szs:J (3.06) BS01 rna ? GO:0002181 ... P0AA10 31776341
    18 6szs:K (3.06) BS01 rna ? GO:0002181 ... P0ADY3 31776341
    19 6szs:K (3.06) BS02 rna ? GO:0002181 ... P0ADY3 31776341
    20 6szs:L (3.06) BS01 rna ? GO:0002181 ... P02413 31776341
    21 6szs:M (3.06) BS01 rna ? GO:0000027 ... P0ADY7 31776341
    22 6szs:M (3.06) BS02 rna ? GO:0000027 ... P0ADY7 31776341
    23 6szs:N (3.06) BS01 rna ? GO:0000027 ... P0AG44 31776341
    24 6szs:O (3.06) BS01 rna ? GO:0002181 ... P0C018 31776341
    25 6szs:O (3.06) BS02 rna ? GO:0002181 ... P0C018 31776341
    26 6szs:P (3.06) BS01 rna ? GO:0000027 ... P0A7K6 31776341
    27 6szs:P (3.06) BS02 rna ? GO:0000027 ... P0A7K6 31776341
    28 6szs:Q (3.06) BS01 rna ? GO:0000027 ... P0A7L3 31776341
    29 6szs:R (3.06) BS01 rna ? GO:0002181 ... P0AG48 31776341
    30 6szs:S (3.06) BS01 rna ? GO:0002181 ... P61175 31776341
    31 6szs:T (3.06) BS01 rna ? GO:0000027 ... P0ADZ0 31776341
    32 6szs:U (3.06) BS01 rna ? GO:0000027 ... P60624 31776341
    33 6szs:V (3.06) BS01 rna ? GO:0000027 ... P68919 31776341
    34 6szs:V (3.06) BS02 rna ? GO:0000027 ... P68919 31776341
    35 6szs:W (3.06) BS01 rna ? GO:0000027 ... P0A7L8 31776341
    36 6szs:W (3.06) BS02 rna ? GO:0000027 ... P0A7L8 31776341
    37 6szs:X (3.06) BS01 rna ? GO:0000027 ... P0A7M2 31776341
    38 6szs:Y (3.06) BS01 rna ? GO:0000027 ... P0A7M6 31776341
    39 6szs:Z (3.06) BS01 rna ? GO:0000027 ... P0AG51 31776341
    40 6szs:b (3.06) BS01 rna ? GO:0000028 ... P0A7V0 31776341
    41 6szs:c (3.06) BS01 rna ? GO:0000028 ... P0A7V3 31776341
    42 6szs:d (3.06) BS01 rna ? GO:0000028 ... P0A7V8 31776341
    43 6szs:e (3.06) BS01 rna ? GO:0000028 ... P0A7W1 31776341
    44 6szs:f (3.06) BS01 rna ? GO:0002181 ... P02358 31776341
    45 6szs:g (3.06) BS01 rna ? GO:0000028 ... P02359 31776341
    46 6szs:h (3.06) BS01 rna ? GO:0000028 ... P0A7W7 31776341
    47 6szs:i (3.06) BS01 rna ? GO:0000049 ... P0A7X3 31776341
    48 6szs:i (3.06) BS02 rna ? GO:0000049 ... P0A7X3 31776341
    49 6szs:j (3.06) BS01 rna ? GO:0000049 ... P0A7R5 31776341
    50 6szs:k (3.06) BS01 rna ? GO:0002181 ... P0A7R9 31776341
    51 6szs:l (3.06) BS01 rna ? GO:0000049 ... P0A7S3 31776341
    52 6szs:m (3.06) BS01 rna ? GO:0000049 ... P0A7S9 31776341
    53 6szs:m (3.06) BS02 rna ? GO:0000049 ... P0A7S9 31776341
    54 6szs:n (3.06) BS01 rna ? GO:0000028 ... P0AG59 31776341
    55 6szs:o (3.06) BS01 rna ? GO:0000028 ... P0ADZ4 31776341
    56 6szs:o (3.06) BS02 rna ? GO:0000028 ... P0ADZ4 31776341
    57 6szs:p (3.06) BS01 rna ? GO:0000028 ... P0A7T3 31776341
    58 6szs:q (3.06) BS01 rna ? GO:0000028 ... P0AG63 31776341
    59 6szs:r (3.06) BS01 rna ? GO:0002181 ... P0A7T7 31776341
    60 6szs:s (3.06) BS01 rna ? GO:0000028 ... P0A7U3 31776341
    61 6szs:t (3.06) BS01 rna ? GO:0000028 ... P0A7U7 31776341
    62 6szs:u (3.06) BS01 rna ? GO:0000028 ... P68679 31776341
    63 6szs:y (3.06) BS01 rna ? N/A P54573 31776341
    64 6szs:y (3.06) BS02 rna ? N/A P54573 31776341
    65 6szs:z (3.06) BS01 rna ? GO:0003747 ... P28367 31776341
    66 6szs:z (3.06) BS02 rna ? GO:0003747 ... P28367 31776341
    67 6szs:z (3.06) BS03 rna ? GO:0003747 ... P28367 31776341
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • zhanglabzhanggroup.org | +65-6601-1241 | Computing 1, 13 Computing Drive, Singapore 117417