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BioLiP
Download all results in tab-seperated text for 15 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6swe:3 (3.1) BS01 rna ? GO:0001682 ... P62008 32029867
    2 6swe:H (3.1) BS01 rna ? GO:0000028 ... Q9V109 32029867
    3 6swe:K (3.1) BS01 rna ? GO:0000462 ... Q9V195 32029867
    4 6swe:L (3.1) BS01 rna ? GO:0000049 ... Q9V0V6 32029867
    5 6swe:O (3.1) BS01 rna ? GO:0003676 ... Q9V1A0 32029867
    6 6swe:O (3.1) BS02 rna ? GO:0003676 ... Q9V1A0 32029867
    7 6swe:P (3.1) BS01 rna ? GO:0003723 ... P62012 32029867
    8 6swe:P (3.1) BS02 ZN ? GO:0003723 ... P62012 32029867
    9 6swe:S (3.1) BS01 rna ? GO:0003735 ... Q9V0G0 32029867
    10 6swe:T (3.1) BS01 rna ? GO:0000028 ... Q9V1T9 32029867
    11 6swe:T (3.1) BS02 rna ? GO:0000028 ... Q9V1T9 32029867
    12 6swe:U (3.1) BS01 rna ? GO:0000028 ... Q9V0G8 32029867
    13 6swe:X (3.1) BS01 rna ? GO:0000028 ... P61029 32029867
    14 6swe:Y (3.1) BS01 rna ? GO:0003735 ... P61238 32029867
    15 6swe:Z (3.1) BS01 rna ? GO:0003676 ... Q9V1U1 32029867
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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