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BioLiP
Download all results in tab-seperated text for 60 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6swa:A (3.1) BS01 rna ? GO:0002181 ... P62918 33357414
    2 6swa:B (3.1) BS01 rna ? GO:0002181 ... P27659 33357414
    3 6swa:C (3.1) BS01 rna ? GO:0003735 ... Q9D8E6 33357414
    4 6swa:C (3.1) BS02 rna ? GO:0003735 ... Q9D8E6 33357414
    5 6swa:D (3.1) BS01 rna ? GO:0002181 ... P47962 33357414
    6 6swa:D (3.1) BS02 rna ? GO:0002181 ... P47962 33357414
    7 6swa:E (3.1) BS01 rna ? GO:0003735 ... P47911 33357414
    8 6swa:F (3.1) BS01 rna ? GO:0000463 ... P14148 33357414
    9 6swa:F (3.1) BS02 rna ? GO:0000463 ... P14148 33357414
    10 6swa:G (3.1) BS01 rna ? GO:0042254 ... P12970 33357414
    11 6swa:G (3.1) BS02 rna ? GO:0042254 ... P12970 33357414
    12 6swa:H (3.1) BS01 rna ? GO:0002181 ... P51410 33357414
    13 6swa:I (3.1) BS01 rna ? GO:0003735 ... Q6ZWV3 33357414
    14 6swa:I (3.1) BS02 rna ? GO:0003735 ... Q6ZWV3 33357414
    15 6swa:J (3.1) BS01 rna ? GO:0000027 ... Q9CXW4 33357414
    16 6swa:J (3.1) BS02 rna ? GO:0000027 ... Q9CXW4 33357414
    17 6swa:K (3.1) BS01 rna ? GO:0001824 ... P47963 33357414
    18 6swa:K (3.1) BS02 rna ? GO:0001824 ... P47963 33357414
    19 6swa:L (3.1) BS01 rna ? GO:0003723 ... Q9CR57 33357414
    20 6swa:M (3.1) BS01 rna ? GO:0002181 ... Q9CZM2 33357414
    21 6swa:M (3.1) BS02 rna ? GO:0002181 ... Q9CZM2 33357414
    22 6swa:N (3.1) BS01 rna ? GO:0002181 ... P19253 33357414
    23 6swa:O (3.1) BS01 rna ? GO:0003735 ... Q9CPR4 33357414
    24 6swa:O (3.1) BS02 rna ? GO:0003735 ... Q9CPR4 33357414
    25 6swa:P (3.1) BS01 rna ? GO:0002181 ... P35980 33357414
    26 6swa:Q (3.1) BS01 rna ? GO:0002181 ... P62717 33357414
    27 6swa:Q (3.1) BS02 rna ? GO:0002181 ... P62717 33357414
    28 6swa:R (3.1) BS01 rna ? GO:0002181 ... O09167 33357414
    29 6swa:R (3.1) BS02 rna ? GO:0002181 ... O09167 33357414
    30 6swa:S (3.1) BS01 rna ? GO:0003735 ... P67984 33357414
    31 6swa:T (3.1) BS01 rna ? GO:0000122 ... P62830 33357414
    32 6swa:U (3.1) BS01 rna ? N/A Q8BP67 33357414
    33 6swa:V (3.1) BS01 rna ? GO:0003735 ... P62751 33357414
    34 6swa:V (3.1) BS02 rna ? GO:0003735 ... P62751 33357414
    35 6swa:W (3.1) BS01 rna ? GO:0003723 ... Q4FZH2 33357414
    36 6swa:W (3.1) BS02 rna ? GO:0003723 ... Q4FZH2 33357414
    37 6swa:X (3.1) BS01 rna ? GO:0003735 ... Q5BLJ9 33357414
    38 6swa:Y (3.1) BS01 rna ? GO:0002181 ... P14115 33357414
    39 6swa:Z (3.1) BS01 rna ? GO:0003735 ... P47915 33357414
    40 6swa:a (3.1) BS01 rna ? GO:0003723 ... P62889 33357414
    41 6swa:b (3.1) BS01 rna ? GO:0003735 ... P62900 33357414
    42 6swa:c (3.1) BS01 rna ? GO:0002181 ... P62911 33357414
    43 6swa:d (3.1) BS01 rna ? GO:0002181 ... O55142 33357414
    44 6swa:e (3.1) BS01 rna ? GO:0002181 ... Q9D1R9 33357414
    45 6swa:f (3.1) BS01 rna ? GO:0000463 ... Q6ZWV7 33357414
    46 6swa:f (3.1) BS02 rna ? GO:0000463 ... Q6ZWV7 33357414
    47 6swa:g (3.1) BS01 rna ? GO:0002181 ... P47964 33357414
    48 6swa:h (3.1) BS01 rna ? GO:0003735 ... Q9D823 33357414
    49 6swa:h (3.1) BS02 rna ? GO:0003735 ... Q9D823 33357414
    50 6swa:h (3.1) BS03 ZN ? GO:0003735 ... Q9D823 33357414
    51 6swa:i (3.1) BS01 rna ? GO:0001501 ... Q9JJI8 33357414
    52 6swa:j (3.1) BS01 rna ? GO:0003735 ... Q505A8 33357414
    53 6swa:j (3.1) BS02 rna ? GO:0003735 ... Q505A8 33357414
    54 6swa:k (3.1) BS01 rna ? GO:0003735 ... Q5M9K3 33357414
    55 6swa:m (3.1) BS01 rna ? GO:0003735 ... Q5M9P1 33357414
    56 6swa:m (3.1) BS02 ZN ? GO:0003735 ... Q5M9P1 33357414
    57 6swa:n (3.1) BS01 rna ? GO:0003735 ... Q4VAF2 33357414
    58 6swa:o (3.1) BS01 rna ? GO:0002181 ... P84099 33357414
    59 6swa:p (3.1) BS01 rna ? GO:0003735 ... P41105 33357414
    60 6swa:t (3.1) BS01 rna ? GO:0003676 ... P50580 33357414
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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