Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 294 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 2 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6sv4:A (3.3) BS01 rna ? GO:0000054 ... P05750 32203490
    2 6sv4:AA (3.3) BS01 rna ? GO:0000470 ... P17076 32203490
    3 6sv4:AA (3.3) BS02 rna ? GO:0000470 ... P17076 32203490
    4 6sv4:AB (3.3) BS01 rna ? GO:0002181 ... P0CX41 32203490
    5 6sv4:AC (3.3) BS01 rna ? GO:0002181 ... P05745 32203490
    6 6sv4:AD (3.3) BS01 rna ? GO:0002181 ... P05738 32203490
    7 6sv4:AE (3.3) BS01 rna ? N/A P04449 32203490
    8 6sv4:AE (3.3) BS02 rna ? N/A P04449 32203490
    9 6sv4:AF (3.3) BS01 rna ? GO:0000448 ... P49166 32203490
    10 6sv4:AF (3.3) BS02 rna ? GO:0000448 ... P49166 32203490
    11 6sv4:AG (3.3) BS01 rna ? GO:0000027 ... P0C0W9 32203490
    12 6sv4:AG (3.3) BS02 rna ? GO:0000027 ... P0C0W9 32203490
    13 6sv4:AH (3.3) BS01 rna ? GO:0000027 ... P04456 32203490
    14 6sv4:AH (3.3) BS02 rna ? GO:0000027 ... P04456 32203490
    15 6sv4:AI (3.3) BS01 rna ? GO:0002181 ... P49167 32203490
    16 6sv4:AJ (3.3) BS01 rna ? GO:0002181 ... Q12690 32203490
    17 6sv4:AJ (3.3) BS02 rna ? GO:0002181 ... Q12690 32203490
    18 6sv4:AK (3.3) BS01 rna ? GO:0002181 ... P05743 32203490
    19 6sv4:AK (3.3) BS02 rna ? GO:0002181 ... P05743 32203490
    20 6sv4:AL (3.3) BS01 rna ? GO:0002181 ... P04650 32203490
    21 6sv4:AL (3.3) BS02 rna ? GO:0002181 ... P04650 32203490
    22 6sv4:AM (3.3) BS01 rna ? GO:0000027 ... P36105 32203490
    23 6sv4:AN (3.3) BS01 rna ? GO:0002181 ... P0C2H6 32203490
    24 6sv4:AN (3.3) BS02 rna ? GO:0002181 ... P0C2H6 32203490
    25 6sv4:AO (3.3) BS01 rna ? GO:0000027 ... P0CH08 32203490
    26 6sv4:AP (3.3) BS01 rna ? GO:0002181 ... P0CX27 32203490
    27 6sv4:AP (3.3) BS02 rna ? GO:0002181 ... P0CX27 32203490
    28 6sv4:AQ (3.3) BS01 rna ? GO:0002181 ... P05748 32203490
    29 6sv4:AQ (3.3) BS02 rna ? GO:0002181 ... P05748 32203490
    30 6sv4:AR (3.3) BS01 rna ? GO:0002181 ... P02406 32203490
    31 6sv4:AT (3.3) BS01 rna ? GO:0002181 ... P0CX25 32203490
    32 6sv4:AU (3.3) BS01 rna ? GO:0000470 ... P26784 32203490
    33 6sv4:AV (3.3) BS01 rna ? GO:0002181 ... P05747 32203490
    34 6sv4:AW (3.3) BS01 rna ? GO:0002181 ... P0CX45 32203490
    35 6sv4:AW (3.3) BS02 rna ? GO:0002181 ... P0CX45 32203490
    36 6sv4:AX (3.3) BS01 rna ? GO:0000448 ... P05740 32203490
    37 6sv4:AX (3.3) BS02 rna ? GO:0000448 ... P05740 32203490
    38 6sv4:AY (3.3) BS01 rna ? GO:0002181 ... P14120 32203490
    39 6sv4:Ab (3.3) BS01 rna ? GO:0000054 ... P05750 32203490
    40 6sv4:Ac (3.3) BS01 rna ? GO:0000054 ... P05750 32203490
    41 6sv4:B (3.3) BS01 rna ? GO:0000028 ... A0A1L4AA68 32203490
    42 6sv4:BA (3.3) BS01 rna ? GO:0000027 ... P14126 32203490
    43 6sv4:BB (3.3) BS01 rna ? GO:0002181 ... P0CX49 32203490
    44 6sv4:BC (3.3) BS01 rna ? GO:0002181 ... P0C2H8 32203490
    45 6sv4:BD (3.3) BS01 rna ? GO:0000027 ... P41805 32203490
    46 6sv4:BD (3.3) BS02 rna ? GO:0000027 ... P41805 32203490
    47 6sv4:BE (3.3) BS01 rna ? GO:0002181 ... P10664 32203490
    48 6sv4:BE (3.3) BS02 rna ? GO:0002181 ... P10664 32203490
    49 6sv4:BF (3.3) BS01 rna ? GO:0002181 ... P0CX82 32203490
    50 6sv4:BF (3.3) BS02 rna ? GO:0002181 ... P0CX82 32203490
    51 6sv4:BG (3.3) BS01 rna ? GO:0002181 ... P38061 32203490
    52 6sv4:BH (3.3) BS01 rna ? GO:0002181 ... P0CX23 32203490
    53 6sv4:BH (3.3) BS02 rna ? GO:0002181 ... P0CX23 32203490
    54 6sv4:BI (3.3) BS01 rna ? GO:0000027 ... P26321 32203490
    55 6sv4:BI (3.3) BS02 rna ? GO:0000027 ... P26321 32203490
    56 6sv4:BJ (3.3) BS01 rna ? GO:0002181 ... Q02753 32203490
    57 6sv4:BJ (3.3) BS02 rna ? GO:0002181 ... Q02753 32203490
    58 6sv4:BK (3.3) BS01 rna ? GO:0000027 ... P05744 32203490
    59 6sv4:BL (3.3) BS01 rna ? GO:0002181 ... P05749 32203490
    60 6sv4:BM (3.3) BS01 rna ? GO:0000027 ... Q02326 32203490
    61 6sv4:BN (3.3) BS01 rna ? GO:0002181 ... P87262 32203490
    62 6sv4:BO (3.3) BS01 rna ? GO:0000463 ... P05737 32203490
    63 6sv4:BO (3.3) BS02 rna ? GO:0000463 ... P05737 32203490
    64 6sv4:BP (3.3) BS01 rna ? GO:0000463 ... P0CX84 32203490
    65 6sv4:BP (3.3) BS02 rna ? GO:0000463 ... P0CX84 32203490
    66 6sv4:BU (3.3) BS01 rna ? GO:0000027 ... P05317 32203490
    67 6sv4:Bb (3.3) BS01 rna ? GO:0000028 ... A0A1L4AA68 32203490
    68 6sv4:Bc (3.3) BS01 rna ? GO:0000028 ... A0A1L4AA68 32203490
    69 6sv4:C (3.3) BS01 rna ? N/A Q08745 32203490
    70 6sv4:Cb (3.3) BS01 rna ? N/A Q08745 32203490
    71 6sv4:Cc (3.3) BS01 rna ? N/A Q08745 32203490
    72 6sv4:D (3.3) BS01 rna ? GO:0000028 ... P48589 32203490
    73 6sv4:Db (3.3) BS01 rna ? GO:0000028 ... P48589 32203490
    74 6sv4:Dc (3.3) BS01 rna ? GO:0000028 ... P48589 32203490
    75 6sv4:E (3.3) BS01 rna ? GO:0000028 ... Q01855 32203490
    76 6sv4:Eb (3.3) BS01 rna ? GO:0000028 ... Q01855 32203490
    77 6sv4:Ec (3.3) BS01 rna ? GO:0000028 ... Q01855 32203490
    78 6sv4:F (3.3) BS01 rna ? GO:0000462 ... P0CX51 32203490
    79 6sv4:Fb (3.3) BS01 rna ? GO:0000462 ... P0CX51 32203490
    80 6sv4:Fc (3.3) BS01 rna ? GO:0000462 ... P0CX51 32203490
    81 6sv4:G (3.3) BS01 rna ? GO:0000028 ... P14127 32203490
    82 6sv4:Gb (3.3) BS01 rna ? GO:0000028 ... P14127 32203490
    83 6sv4:Gc (3.3) BS01 rna ? GO:0000028 ... P14127 32203490
    84 6sv4:H (3.3) BS01 rna ? GO:0000054 ... P0CX55 32203490
    85 6sv4:Hb (3.3) BS01 rna ? GO:0000054 ... P0CX55 32203490
    86 6sv4:Hc (3.3) BS01 rna ? GO:0000054 ... P0CX55 32203490
    87 6sv4:I (3.3) BS01 rna ? GO:0000028 ... P07280 32203490
    88 6sv4:Ib (3.3) BS01 rna ? GO:0000028 ... P07280 32203490
    89 6sv4:Ic (3.3) BS01 rna ? GO:0000028 ... P07280 32203490
    90 6sv4:J (3.3) BS01 rna ? GO:0000462 ... P38701 32203490
    91 6sv4:Jb (3.3) BS01 rna ? GO:0000462 ... P38701 32203490
    92 6sv4:Jc (3.3) BS01 rna ? GO:0000462 ... P38701 32203490
    93 6sv4:K (3.3) BS01 rna ? GO:0002181 ... Q3E792 32203490
    94 6sv4:Kb (3.3) BS01 rna ? GO:0002181 ... Q3E792 32203490
    95 6sv4:Kc (3.3) BS01 rna ? GO:0002181 ... Q3E792 32203490
    96 6sv4:L (3.3) BS01 rna ? GO:0000028 ... P0C0X0 32203490
    97 6sv4:Lb (3.3) BS01 rna ? GO:0000028 ... P0C0X0 32203490
    98 6sv4:Lc (3.3) BS01 rna ? GO:0000028 ... P0C0X0 32203490
    99 6sv4:M (3.3) BS01 rna ? GO:0002181 ... P41057 32203490
    100 6sv4:Mb (3.3) BS01 rna ? GO:0002181 ... P41057 32203490
    101 6sv4:Mc (3.3) BS01 rna ? GO:0002181 ... P41057 32203490
    102 6sv4:N (3.3) BS01 rna ? GO:0000028 ... P05759 32203490
    103 6sv4:Nb (3.3) BS01 rna ? GO:0000028 ... P05759 32203490
    104 6sv4:Nc (3.3) BS01 rna ? GO:0000028 ... P05759 32203490
    105 6sv4:O (3.3) BS01 rna ? GO:0001965 ... P38011 32203490
    106 6sv4:Ob (3.3) BS01 rna ? GO:0001965 ... P38011 32203490
    107 6sv4:Oc (3.3) BS01 rna ? GO:0001965 ... P38011 32203490
    108 6sv4:P (3.3) BS01 rna ? GO:0000028 ... P32905 32203490
    109 6sv4:Pb (3.3) BS01 rna ? GO:0000028 ... P32905 32203490
    110 6sv4:Pc (3.3) BS01 rna ? GO:0000028 ... P32905 32203490
    111 6sv4:Q (3.3) BS01 rna ? GO:0000462 ... P33442 32203490
    112 6sv4:Qb (3.3) BS01 rna ? GO:0000462 ... P33442 32203490
    113 6sv4:Qb (3.3) BS02 rna ? GO:0000462 ... P33442 32203490
    114 6sv4:Qc (3.3) BS01 rna ? GO:0000462 ... P33442 32203490
    115 6sv4:Qc (3.3) BS02 rna ? GO:0000462 ... P33442 32203490
    116 6sv4:R (3.3) BS01 rna ? GO:0000054 ... P25443 32203490
    117 6sv4:Rb (3.3) BS01 rna ? GO:0000054 ... P25443 32203490
    118 6sv4:Rc (3.3) BS01 rna ? GO:0000054 ... P25443 32203490
    119 6sv4:S (3.3) BS01 rna ? GO:0002181 ... P0CX35 32203490
    120 6sv4:Sb (3.3) BS01 rna ? GO:0002181 ... P0CX35 32203490
    121 6sv4:Sb (3.3) BS02 rna ? GO:0002181 ... P0CX35 32203490
    122 6sv4:Sc (3.3) BS01 rna ? GO:0002181 ... P0CX35 32203490
    123 6sv4:Sc (3.3) BS02 rna ? GO:0002181 ... P0CX35 32203490
    124 6sv4:T (3.3) BS01 rna ? GO:0000462 ... P0CX37 32203490
    125 6sv4:Tb (3.3) BS01 rna ? GO:0000462 ... P0CX37 32203490
    126 6sv4:Tc (3.3) BS01 rna ? GO:0000462 ... P0CX37 32203490
    127 6sv4:U (3.3) BS01 rna ? GO:0002181 ... P26786 32203490
    128 6sv4:Ub (3.3) BS01 rna ? GO:0002181 ... P26786 32203490
    129 6sv4:Uc (3.3) BS01 rna ? GO:0002181 ... P26786 32203490
    130 6sv4:V (3.3) BS01 rna ? GO:0000462 ... P0CX39 32203490
    131 6sv4:V (3.3) BS02 rna ? GO:0000462 ... P0CX39 32203490
    132 6sv4:Vb (3.3) BS01 rna ? GO:0000462 ... P0CX39 32203490
    133 6sv4:Vb (3.3) BS02 rna ? GO:0000462 ... P0CX39 32203490
    134 6sv4:Vc (3.3) BS01 rna ? GO:0000462 ... P0CX39 32203490
    135 6sv4:Vc (3.3) BS02 rna ? GO:0000462 ... P0CX39 32203490
    136 6sv4:W (3.3) BS01 rna ? GO:0000462 ... O13516 32203490
    137 6sv4:Wb (3.3) BS01 rna ? GO:0000462 ... O13516 32203490
    138 6sv4:Wc (3.3) BS01 rna ? GO:0000462 ... O13516 32203490
    139 6sv4:Wc (3.3) BS02 rna ? GO:0000462 ... O13516 32203490
    140 6sv4:X (3.3) BS01 rna ? GO:0000028 ... P0CX47 32203490
    141 6sv4:XA (3.3) BS01 rna ? GO:0000470 ... P17076 32203490
    142 6sv4:XA (3.3) BS02 rna ? GO:0000470 ... P17076 32203490
    143 6sv4:XB (3.3) BS01 rna ? GO:0002181 ... P0CX41 32203490
    144 6sv4:XC (3.3) BS01 rna ? GO:0002181 ... P05745 32203490
    145 6sv4:XD (3.3) BS01 rna ? GO:0002181 ... P05738 32203490
    146 6sv4:XE (3.3) BS01 rna ? N/A P04449 32203490
    147 6sv4:XE (3.3) BS02 rna ? N/A P04449 32203490
    148 6sv4:XF (3.3) BS01 rna ? GO:0000448 ... P49166 32203490
    149 6sv4:XF (3.3) BS02 rna ? GO:0000448 ... P49166 32203490
    150 6sv4:XG (3.3) BS01 rna ? GO:0000027 ... P0C0W9 32203490
    151 6sv4:XG (3.3) BS02 rna ? GO:0000027 ... P0C0W9 32203490
    152 6sv4:XH (3.3) BS01 rna ? GO:0000027 ... P04456 32203490
    153 6sv4:XH (3.3) BS02 rna ? GO:0000027 ... P04456 32203490
    154 6sv4:XI (3.3) BS01 rna ? GO:0002181 ... P49167 32203490
    155 6sv4:XJ (3.3) BS01 rna ? GO:0002181 ... Q12690 32203490
    156 6sv4:XJ (3.3) BS02 rna ? GO:0002181 ... Q12690 32203490
    157 6sv4:XK (3.3) BS01 rna ? GO:0002181 ... P05743 32203490
    158 6sv4:XK (3.3) BS02 rna ? GO:0002181 ... P05743 32203490
    159 6sv4:XL (3.3) BS01 rna ? GO:0002181 ... P04650 32203490
    160 6sv4:XL (3.3) BS02 rna ? GO:0002181 ... P04650 32203490
    161 6sv4:XM (3.3) BS01 rna ? GO:0000027 ... P36105 32203490
    162 6sv4:XN (3.3) BS01 rna ? GO:0002181 ... P0C2H6 32203490
    163 6sv4:XN (3.3) BS02 rna ? GO:0002181 ... P0C2H6 32203490
    164 6sv4:XO (3.3) BS01 rna ? GO:0000027 ... P0CH08 32203490
    165 6sv4:XP (3.3) BS01 rna ? GO:0002181 ... P0CX27 32203490
    166 6sv4:XP (3.3) BS02 rna ? GO:0002181 ... P0CX27 32203490
    167 6sv4:XQ (3.3) BS01 rna ? GO:0002181 ... P05748 32203490
    168 6sv4:XQ (3.3) BS02 rna ? GO:0002181 ... P05748 32203490
    169 6sv4:XR (3.3) BS01 rna ? GO:0002181 ... P02406 32203490
    170 6sv4:XT (3.3) BS01 rna ? GO:0002181 ... P0CX25 32203490
    171 6sv4:XT (3.3) BS02 rna ? GO:0002181 ... P0CX25 32203490
    172 6sv4:XU (3.3) BS01 rna ? GO:0000470 ... P26784 32203490
    173 6sv4:XV (3.3) BS01 rna ? GO:0002181 ... P05747 32203490
    174 6sv4:XW (3.3) BS01 rna ? GO:0002181 ... P0CX45 32203490
    175 6sv4:XW (3.3) BS02 rna ? GO:0002181 ... P0CX45 32203490
    176 6sv4:XX (3.3) BS01 rna ? GO:0000448 ... P05740 32203490
    177 6sv4:XX (3.3) BS02 rna ? GO:0000448 ... P05740 32203490
    178 6sv4:XY (3.3) BS01 rna ? GO:0002181 ... P14120 32203490
    179 6sv4:Xb (3.3) BS01 rna ? GO:0000028 ... P0CX47 32203490
    180 6sv4:Xc (3.3) BS01 rna ? GO:0000028 ... P0CX47 32203490
    181 6sv4:Y (3.3) BS01 rna ? GO:0000462 ... P05756 32203490
    182 6sv4:Y (3.3) BS02 rna ? GO:0000462 ... P05756 32203490
    183 6sv4:YA (3.3) BS01 rna ? GO:0000027 ... P14126 32203490
    184 6sv4:YB (3.3) BS01 rna ? GO:0002181 ... P0CX49 32203490
    185 6sv4:YC (3.3) BS01 rna ? GO:0002181 ... P0C2H8 32203490
    186 6sv4:YD (3.3) BS01 rna ? GO:0000027 ... P41805 32203490
    187 6sv4:YD (3.3) BS02 rna ? GO:0000027 ... P41805 32203490
    188 6sv4:YE (3.3) BS01 rna ? GO:0002181 ... P10664 32203490
    189 6sv4:YE (3.3) BS02 rna ? GO:0002181 ... P10664 32203490
    190 6sv4:YF (3.3) BS01 rna ? GO:0002181 ... P0CX82 32203490
    191 6sv4:YF (3.3) BS02 rna ? GO:0002181 ... P0CX82 32203490
    192 6sv4:YG (3.3) BS01 rna ? GO:0002181 ... P38061 32203490
    193 6sv4:YH (3.3) BS01 rna ? GO:0002181 ... P0CX23 32203490
    194 6sv4:YH (3.3) BS02 rna ? GO:0002181 ... P0CX23 32203490
    195 6sv4:YI (3.3) BS01 rna ? GO:0000027 ... P26321 32203490
    196 6sv4:YI (3.3) BS02 rna ? GO:0000027 ... P26321 32203490
    197 6sv4:YJ (3.3) BS01 rna ? GO:0002181 ... Q02753 32203490
    198 6sv4:YJ (3.3) BS02 rna ? GO:0002181 ... Q02753 32203490
    199 6sv4:YK (3.3) BS01 rna ? GO:0000027 ... P05744 32203490
    200 6sv4:YL (3.3) BS01 rna ? GO:0002181 ... P05749 32203490
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218