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BioLiP
Download all results in tab-seperated text for 57 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6spf:2 (2.89) BS01 rna ? GO:0003735 ... A0A069QB25 31611393
    2 6spf:3 (2.89) BS01 rna ? GO:0003735 ... A0A140SG33 31611393
    3 6spf:4 (2.89) BS01 rna ? GO:0003735 ... A0A087L9L7 31611393
    4 6spf:5 (2.89) BS01 rna ? GO:0003735 ... A0A069QC44 31611393
    5 6spf:6 (2.89) BS01 rna ? GO:0003735 ... E2RXU2 31611393
    6 6spf:C (2.89) BS01 rna ? GO:0002181 ... A0A241XHA2 31611393
    7 6spf:D (2.89) BS01 rna ? GO:0003735 ... A0A072ZBZ2 31611393
    8 6spf:E (2.89) BS01 rna ? GO:0003735 ... A0A241XH26 31611393
    9 6spf:F (2.89) BS01 rna ? GO:0000049 ... A0A072ZMU2 31611393
    10 6spf:F (2.89) BS02 rna ? GO:0000049 ... A0A072ZMU2 31611393
    11 6spf:G (2.89) BS01 rna ? GO:0002181 ... A0A2V3F3S9 31611393
    12 6spf:H (2.89) BS01 rna ? GO:0003735 ... A0A072ZKF0 31611393
    13 6spf:I (2.89) BS01 rna ? GO:0003735 ... A0A2V3GYK0 31611393
    14 6spf:J (2.89) BS01 rna ? GO:0003729 ... A0A071L356 31611393
    15 6spf:K (2.89) BS01 rna ? GO:0003735 ... E2RXT6 31611393
    16 6spf:K (2.89) BS02 rna ? GO:0003735 ... E2RXT6 31611393
    17 6spf:L (2.89) BS01 rna ? GO:0003735 ... A0A2V3D5Z8 31611393
    18 6spf:M (2.89) BS01 rna ? GO:0000049 ... A0A069QEB6 31611393
    19 6spf:M (2.89) BS02 rna ? GO:0000049 ... A0A069QEB6 31611393
    20 6spf:N (2.89) BS01 rna ? GO:0003735 ... A0A072ZCA1 31611393
    21 6spf:O (2.89) BS01 rna ? GO:0003735 ... E2RXU0 31611393
    22 6spf:O (2.89) BS02 rna ? GO:0003735 ... E2RXU0 31611393
    23 6spf:P (2.89) BS01 rna ? GO:0003735 ... A0A263PZC6 31611393
    24 6spf:P (2.89) BS02 rna ? GO:0003735 ... A0A263PZC6 31611393
    25 6spf:Q (2.89) BS01 rna ? GO:0000027 ... A0A069QEE3 31611393
    26 6spf:R (2.89) BS01 rna ? GO:0003723 ... A0A072ZDZ0 31611393
    27 6spf:S (2.89) BS01 rna N/A GO:0003735 ... N/A 31611393
    28 6spf:T (2.89) BS01 rna ? GO:0000027 ... E2RXT1 31611393
    29 6spf:U (2.89) BS01 rna ? GO:0003723 ... E2RXT7 31611393
    30 6spf:V (2.89) BS01 rna ? GO:0003723 ... A0A072ZBM5 31611393
    31 6spf:V (2.89) BS02 rna ? GO:0003723 ... A0A072ZBM5 31611393
    32 6spf:W (2.89) BS01 rna ? GO:0003735 ... A0A071LFT4 31611393
    33 6spf:X (2.89) BS01 rna ? GO:0003735 ... A0A072ZIQ9 31611393
    34 6spf:Y (2.89) BS01 rna N/A GO:0003735 ... N/A 31611393
    35 6spf:Z (2.89) BS01 rna ? GO:0003735 ... E2RXU1 31611393
    36 6spf:Z (2.89) BS02 rna ? GO:0003735 ... E2RXU1 31611393
    37 6spf:b (2.89) BS01 rna ? GO:0003735 ... A0A072ZPV8 31611393
    38 6spf:c (2.89) BS01 rna ? GO:0003676 ... A0A140S919 31611393
    39 6spf:d (2.89) BS01 rna ? GO:0003723 ... A0A072ZDF7 31611393
    40 6spf:e (2.89) BS01 rna ? GO:0003723 ... A0A241XG65 31611393
    41 6spf:f (2.89) BS01 rna ? GO:0003735 ... A0A069Q263 31611393
    42 6spf:g (2.89) BS01 rna ? GO:0000028 ... A0A2V3F2U6 31611393
    43 6spf:h (2.89) BS01 rna ? GO:0003735 ... E2RXT9 31611393
    44 6spf:i (2.89) BS01 rna ? GO:0003723 ... A0A069PXX1 31611393
    45 6spf:j (2.89) BS01 rna ? GO:0000049 ... E2RXT0 31611393
    46 6spf:k (2.89) BS01 rna ? GO:0003735 ... E2RXU4 31611393
    47 6spf:l (2.89) BS01 rna ? GO:0000049 ... A0A071L394 31611393
    48 6spf:m (2.89) BS01 rna ? GO:0000049 ... E2RXU3 31611393
    49 6spf:n (2.89) BS01 rna ? GO:0003735 ... E2RXT8 31611393
    50 6spf:o (2.89) BS01 rna ? GO:0003735 ... A0A071L3R7 31611393
    51 6spf:o (2.89) BS02 rna ? GO:0003735 ... A0A071L3R7 31611393
    52 6spf:p (2.89) BS01 rna ? GO:0003735 ... A0A2V4FRZ2 31611393
    53 6spf:q (2.89) BS01 rna ? GO:0003735 ... E2RXT5 31611393
    54 6spf:r (2.89) BS01 rna ? GO:0003735 ... A0A2V3DLV3 31611393
    55 6spf:s (2.89) BS01 rna ? GO:0003723 ... E2RXT2 31611393
    56 6spf:t (2.89) BS01 rna ? GO:0003723 ... A0A072ZDZ9 31611393
    57 6spf:u (2.89) BS01 rna ? GO:0003735 ... A0A069QC99 31611393
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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