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BioLiP
Download all results in tab-seperated text for 96 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6s47:AD (3.28) BS01 rna ? GO:0002181 ... P0CX45 31299085
    2 6s47:AD (3.28) BS02 rna ? GO:0002181 ... P0CX45 31299085
    3 6s47:AE (3.28) BS01 rna ? GO:0000027 ... P14126 31299085
    4 6s47:AF (3.28) BS01 rna ? GO:0002181 ... P10664 31299085
    5 6s47:AF (3.28) BS02 rna ? GO:0002181 ... P10664 31299085
    6 6s47:AG (3.28) BS01 rna ? GO:0000027 ... P26321 31299085
    7 6s47:AG (3.28) BS02 rna ? GO:0000027 ... P26321 31299085
    8 6s47:AH (3.28) BS01 rna ? GO:0000027 ... Q02326 31299085
    9 6s47:AI (3.28) BS01 rna ? GO:0000463 ... P05737 31299085
    10 6s47:AI (3.28) BS02 rna ? GO:0000463 ... P05737 31299085
    11 6s47:AJ (3.28) BS01 rna ? GO:0000470 ... P17076 31299085
    12 6s47:AJ (3.28) BS02 rna ? GO:0000470 ... P17076 31299085
    13 6s47:AK (3.28) BS01 rna ? GO:0002181 ... P05738 31299085
    14 6s47:AL (3.28) BS01 rna ? GO:0000027 ... P41805 31299085
    15 6s47:AL (3.28) BS02 rna ? GO:0000027 ... P41805 31299085
    16 6s47:AM (3.28) BS01 rna ? GO:0000027 ... Q3E757 31299085
    17 6s47:AM (3.28) BS02 rna ? GO:0000027 ... Q3E757 31299085
    18 6s47:AN (3.28) BS01 rna ? GO:0002181 ... Q12690 31299085
    19 6s47:AN (3.28) BS02 rna ? GO:0002181 ... Q12690 31299085
    20 6s47:AO (3.28) BS01 rna ? GO:0000027 ... P36105 31299085
    21 6s47:AP (3.28) BS01 rna ? GO:0002181 ... P05748 31299085
    22 6s47:AP (3.28) BS02 rna ? GO:0002181 ... P05748 31299085
    23 6s47:AQ (3.28) BS01 rna ? GO:0000470 ... P26784 31299085
    24 6s47:AR (3.28) BS01 rna ? GO:0000448 ... P05740 31299085
    25 6s47:AR (3.28) BS02 rna ? GO:0000448 ... P05740 31299085
    26 6s47:AS (3.28) BS01 rna ? GO:0002181 ... P0CX49 31299085
    27 6s47:AT (3.28) BS01 rna ? GO:0002181 ... P0CX82 31299085
    28 6s47:AU (3.28) BS01 rna ? GO:0002181 ... P0CX23 31299085
    29 6s47:AU (3.28) BS02 rna ? GO:0002181 ... P0CX23 31299085
    30 6s47:AV (3.28) BS01 rna ? GO:0002181 ... Q02753 31299085
    31 6s47:AV (3.28) BS02 rna ? GO:0002181 ... Q02753 31299085
    32 6s47:AW (3.28) BS01 rna ? GO:0002181 ... P05749 31299085
    33 6s47:AX (3.28) BS01 rna ? GO:0002181 ... P0CX41 31299085
    34 6s47:AY (3.28) BS01 rna ? GO:0002181 ... P04449 31299085
    35 6s47:AZ (3.28) BS01 rna ? GO:0000027 ... P04456 31299085
    36 6s47:AZ (3.28) BS02 rna ? GO:0000027 ... P04456 31299085
    37 6s47:Aa (3.28) BS01 rna ? GO:0002181 ... P05743 31299085
    38 6s47:Aa (3.28) BS02 rna ? GO:0002181 ... P05743 31299085
    39 6s47:Ab (3.28) BS01 rna ? GO:0002181 ... P0C2H6 31299085
    40 6s47:Ac (3.28) BS01 rna ? GO:0002181 ... P02406 31299085
    41 6s47:Ad (3.28) BS01 rna ? GO:0002181 ... P05747 31299085
    42 6s47:Ae (3.28) BS01 rna ? GO:0002181 ... P14120 31299085
    43 6s47:Af (3.28) BS01 rna ? GO:0002181 ... P0C2H8 31299085
    44 6s47:Ag (3.28) BS01 rna ? GO:0002181 ... P38061 31299085
    45 6s47:Ah (3.28) BS01 rna ? GO:0000027 ... P05744 31299085
    46 6s47:Ai (3.28) BS01 rna ? GO:0002181 ... P87262 31299085
    47 6s47:Aj (3.28) BS01 rna ? GO:0000463 ... P0CX84 31299085
    48 6s47:Aj (3.28) BS02 rna ? GO:0000463 ... P0CX84 31299085
    49 6s47:Ak (3.28) BS01 rna ? GO:0002181 ... P05745 31299085
    50 6s47:Al (3.28) BS01 rna ? GO:0000448 ... P49166 31299085
    51 6s47:Al (3.28) BS02 rna ? GO:0000448 ... P49166 31299085
    52 6s47:Am (3.28) BS01 rna ? GO:0002181 ... P49167 31299085
    53 6s47:An (3.28) BS01 rna ? GO:0002181 ... P04650 31299085
    54 6s47:An (3.28) BS02 rna ? GO:0002181 ... P04650 31299085
    55 6s47:Ao (3.28) BS01 rna ? GO:0000027 ... P0CH08 31299085
    56 6s47:Aq (3.28) BS01 rna ? GO:0002181 ... P0CX27 31299085
    57 6s47:Ar (3.28) BS01 rna ? GO:0002181 ... P0CX25 31299085
    58 6s47:BB (3.28) BS01 rna ? GO:0000028 ... P32905 31299085
    59 6s47:BC (3.28) BS01 rna ? GO:0003735 ... B3RHV0 31299085
    60 6s47:BD (3.28) BS01 rna ? GO:0000054 ... P25443 31299085
    61 6s47:BE (3.28) BS01 rna ? GO:0000054 ... P05750 31299085
    62 6s47:BF (3.28) BS01 rna ? GO:0002181 ... P0CX35 31299085
    63 6s47:BG (3.28) BS01 rna ? GO:0000028 ... A0A1L4AA68 31299085
    64 6s47:BH (3.28) BS01 rna ? GO:0000462 ... P0CX37 31299085
    65 6s47:BI (3.28) BS01 rna ? GO:0002181 ... P26786 31299085
    66 6s47:BJ (3.28) BS01 rna ? GO:0000462 ... P0CX39 31299085
    67 6s47:BJ (3.28) BS02 rna ? GO:0000462 ... P0CX39 31299085
    68 6s47:BK (3.28) BS01 rna ? GO:0000462 ... O13516 31299085
    69 6s47:BL (3.28) BS01 rna ? GO:0000054 ... Q08745 31299085
    70 6s47:BM (3.28) BS01 rna ? GO:0000028 ... P0CX47 31299085
    71 6s47:BN (3.28) BS01 rna ? GO:0000028 ... P48589 31299085
    72 6s47:BO (3.28) BS01 rna ? GO:0000462 ... P05756 31299085
    73 6s47:BO (3.28) BS02 rna ? GO:0000462 ... P05756 31299085
    74 6s47:BP (3.28) BS01 rna ? GO:0000028 ... P06367 31299085
    75 6s47:BQ (3.28) BS01 rna ? GO:0000028 ... Q01855 31299085
    76 6s47:BR (3.28) BS01 rna ? GO:0000462 ... P0CX51 31299085
    77 6s47:BS (3.28) BS01 rna ? GO:0000028 ... P02407 31299085
    78 6s47:BT (3.28) BS01 rna ? GO:0000054 ... P0CX55 31299085
    79 6s47:BU (3.28) BS01 rna ? GO:0000028 ... P07280 31299085
    80 6s47:BV (3.28) BS01 rna ? GO:0000462 ... P38701 31299085
    81 6s47:BW (3.28) BS01 rna ? GO:0000447 ... P0C0V8 31299085
    82 6s47:BX (3.28) BS01 rna ? GO:0002181 ... P0C0W1 31299085
    83 6s47:BY (3.28) BS01 rna ? GO:0000462 ... P0CX29 31299085
    84 6s47:BZ (3.28) BS01 rna ? GO:0000462 ... P0CX31 31299085
    85 6s47:Ba (3.28) BS01 rna ? GO:0002181 ... Q3E792 31299085
    86 6s47:Bb (3.28) BS01 rna ? GO:0000054 ... P39939 31299085
    87 6s47:Bc (3.28) BS01 rna ? GO:0000028 ... P35997 31299085
    88 6s47:Bd (3.28) BS01 rna ? GO:0000028 ... Q3E7X9 31299085
    89 6s47:Be (3.28) BS01 rna ? GO:0002181 ... P41057 31299085
    90 6s47:Bf (3.28) BS01 rna ? GO:0002181 ... P0CX33 31299085
    91 6s47:Bg (3.28) BS01 rna ? GO:0000028 ... P05759 31299085
    92 6s47:Bh (3.28) BS01 rna ? GO:0001965 ... P38011 31299085
    93 6s47:Bi (3.28) BS01 rna ? GO:0005524 ... Q08972 31299085
    94 6s47:Bi (3.28) BS02 rna ? GO:0005524 ... Q08972 31299085
    95 6s47:Bi (3.28) BS03 ATP ? GO:0005524 ... Q08972 31299085
    96 6s47:Bi (3.28) BS04 ATP ? GO:0005524 ... Q08972 31299085
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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