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BioLiP
Download all results in tab-seperated text for 19 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6rn3:A (4.0) BS01 peptide N/A GO:0005524 ... N/A 31216466
    2 6rn3:A (4.0) BS02 AGS N/A GO:0005524 ... N/A 31216466
    3 6rn3:A (4.0) BS03 ADP N/A GO:0005524 ... N/A 31216466
    4 6rn3:A (4.0) BS04 AGS N/A GO:0005524 ... N/A 31216466
    5 6rn3:B (4.0) BS01 peptide N/A GO:0005524 ... N/A 31216466
    6 6rn3:B (4.0) BS02 AGS N/A GO:0005524 ... N/A 31216466
    7 6rn3:B (4.0) BS03 AGS N/A GO:0005524 ... N/A 31216466
    8 6rn3:C (4.0) BS01 peptide N/A GO:0005524 ... N/A 31216466
    9 6rn3:C (4.0) BS02 AGS N/A GO:0005524 ... N/A 31216466
    10 6rn3:C (4.0) BS03 AGS N/A GO:0005524 ... N/A 31216466
    11 6rn3:C (4.0) BS04 AGS N/A GO:0005524 ... N/A 31216466
    12 6rn3:D (4.0) BS01 peptide N/A GO:0005524 ... N/A 31216466
    13 6rn3:D (4.0) BS02 AGS N/A GO:0005524 ... N/A 31216466
    14 6rn3:D (4.0) BS03 AGS N/A GO:0005524 ... N/A 31216466
    15 6rn3:D (4.0) BS04 AGS N/A GO:0005524 ... N/A 31216466
    16 6rn3:E (4.0) BS01 peptide N/A GO:0005524 ... N/A 31216466
    17 6rn3:E (4.0) BS02 AGS N/A GO:0005524 ... N/A 31216466
    18 6rn3:E (4.0) BS03 AGS N/A GO:0005524 ... N/A 31216466
    19 6rn3:F (4.0) BS01 ADP N/A GO:0005524 ... N/A 31216466
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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