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BioLiP
Download all results in tab-seperated text for 62 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6r86:5 (3.4) BS01 rna ? GO:0000448 ... P05740 31189955
    2 6r86:5 (3.4) BS02 rna ? GO:0000448 ... P05740 31189955
    3 6r86:7 (3.4) BS01 rna ? GO:0002181 ... P05738 31189955
    4 6r86:C (3.4) BS01 rna ? GO:0002181 ... P0CX27 31189955
    5 6r86:D (3.4) BS01 rna ? GO:0002181 ... P0CX25 31189955
    6 6r86:E (3.4) BS01 rna ? GO:0002181 ... P0CX45 31189955
    7 6r86:F (3.4) BS01 rna ? GO:0000027 ... P14126 31189955
    8 6r86:G (3.4) BS01 rna ? GO:0002181 ... P10664 31189955
    9 6r86:G (3.4) BS02 rna ? GO:0002181 ... P10664 31189955
    10 6r86:H (3.4) BS01 rna ? GO:0000027 ... P26321 31189955
    11 6r86:H (3.4) BS02 rna ? GO:0000027 ... P26321 31189955
    12 6r86:I (3.4) BS01 rna ? GO:0000027 ... Q02326 31189955
    13 6r86:J (3.4) BS01 rna ? GO:0000463 ... P05737 31189955
    14 6r86:J (3.4) BS02 rna ? GO:0000463 ... P05737 31189955
    15 6r86:K (3.4) BS01 rna ? GO:0000470 ... P17076 31189955
    16 6r86:K (3.4) BS02 rna ? GO:0000470 ... P17076 31189955
    17 6r86:L (3.4) BS01 rna ? GO:0000055 ... P0CX43 31189955
    18 6r86:M (3.4) BS01 rna ? GO:0000027 ... Q3E757 31189955
    19 6r86:M (3.4) BS02 rna ? GO:0000027 ... Q3E757 31189955
    20 6r86:N (3.4) BS01 rna ? GO:0002181 ... Q12690 31189955
    21 6r86:N (3.4) BS02 rna ? GO:0002181 ... Q12690 31189955
    22 6r86:O (3.4) BS01 rna ? GO:0000027 ... P36105 31189955
    23 6r86:P (3.4) BS01 rna ? GO:0000027 ... P0CX53 31189955
    24 6r86:Q (3.4) BS01 rna ? GO:0000470 ... P26784 31189955
    25 6r86:R (3.4) BS01 rna 3.1.-.- N/A Q04311 31189955
    26 6r86:R (3.4) BS02 ZN 3.1.-.- N/A Q04311 31189955
    27 6r86:S (3.4) BS01 rna ? GO:0002181 ... P0CX49 31189955
    28 6r86:T (3.4) BS01 rna ? GO:0003723 ... P0CX82 31189955
    29 6r86:U (3.4) BS01 rna ? GO:0002181 ... P0CX23 31189955
    30 6r86:U (3.4) BS02 rna ? GO:0002181 ... P0CX23 31189955
    31 6r86:V (3.4) BS01 rna ? GO:0002181 ... Q02753 31189955
    32 6r86:V (3.4) BS02 rna ? GO:0002181 ... Q02753 31189955
    33 6r86:W (3.4) BS01 rna ? GO:0003735 ... P05749 31189955
    34 6r86:X (3.4) BS01 rna ? GO:0000054 ... Q12522 31189955
    35 6r86:Y (3.4) BS01 rna ? N/A P04449 31189955
    36 6r86:Z (3.4) BS01 rna ? GO:0003735 ... P04456 31189955
    37 6r86:Z (3.4) BS02 rna ? GO:0003735 ... P04456 31189955
    38 6r86:a (3.4) BS01 rna ? GO:0002181 ... P05743 31189955
    39 6r86:a (3.4) BS02 rna ? GO:0002181 ... P05743 31189955
    40 6r86:b (3.4) BS01 rna ? GO:0002181 ... P0C2H6 31189955
    41 6r86:c (3.4) BS01 rna ? GO:0002181 ... P02406 31189955
    42 6r86:d (3.4) BS01 rna ? GO:0002181 ... P05747 31189955
    43 6r86:e (3.4) BS01 rna ? GO:0002181 ... P14120 31189955
    44 6r86:f (3.4) BS01 rna ? GO:0002181 ... P0C2H8 31189955
    45 6r86:g (3.4) BS01 rna ? GO:0002181 ... P38061 31189955
    46 6r86:h (3.4) BS01 rna ? GO:0000027 ... P05744 31189955
    47 6r86:i (3.4) BS01 rna ? GO:0002181 ... P87262 31189955
    48 6r86:j (3.4) BS01 rna ? GO:0000463 ... P0CX84 31189955
    49 6r86:j (3.4) BS02 rna ? GO:0000463 ... P0CX84 31189955
    50 6r86:k (3.4) BS01 rna ? GO:0002181 ... P05745 31189955
    51 6r86:l (3.4) BS01 rna ? GO:0000448 ... P49166 31189955
    52 6r86:l (3.4) BS02 rna ? GO:0000448 ... P49166 31189955
    53 6r86:m (3.4) BS01 rna ? GO:0002181 ... P49167 31189955
    54 6r86:n (3.4) BS01 rna ? GO:0002181 ... P04650 31189955
    55 6r86:n (3.4) BS02 rna ? GO:0002181 ... P04650 31189955
    56 6r86:o (3.4) BS01 rna ? GO:0003735 ... P0CH08 31189955
    57 6r86:p (3.4) BS01 rna ? GO:0002181 ... P05748 31189955
    58 6r86:p (3.4) BS02 rna ? GO:0002181 ... P05748 31189955
    59 6r86:r (3.4) BS01 rna ? N/A P05317 31189955
    60 6r86:s (3.4) BS01 rna ? GO:0000027 ... P41805 31189955
    61 6r86:s (3.4) BS02 rna ? GO:0000027 ... P41805 31189955
    62 6r86:x (3.4) BS01 rna ? GO:0002181 ... P0CX41 31189955
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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