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BioLiP
Download all results in tab-seperated text for 110 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6q8y:A (3.1) BS01 rna ? GO:0000054 ... P05750 30911188
    2 6q8y:AA (3.1) BS01 rna ? GO:0000470 ... P17076 30911188
    3 6q8y:AA (3.1) BS02 rna ? GO:0000470 ... P17076 30911188
    4 6q8y:AB (3.1) BS01 rna ? GO:0002181 ... P0CX41 30911188
    5 6q8y:AC (3.1) BS01 rna ? GO:0002181 ... P05745 30911188
    6 6q8y:AD (3.1) BS01 rna ? GO:0002181 ... P05738 30911188
    7 6q8y:AE (3.1) BS01 rna ? N/A P04449 30911188
    8 6q8y:AF (3.1) BS01 rna ? GO:0000448 ... P49166 30911188
    9 6q8y:AF (3.1) BS02 rna ? GO:0000448 ... P49166 30911188
    10 6q8y:AF (3.1) BS03 ZN ? GO:0000448 ... P49166 30911188
    11 6q8y:AG (3.1) BS01 rna ? GO:0000027 ... Q3E757 30911188
    12 6q8y:AG (3.1) BS02 rna ? GO:0000027 ... Q3E757 30911188
    13 6q8y:AH (3.1) BS01 rna ? GO:0003735 ... P04456 30911188
    14 6q8y:AH (3.1) BS02 rna ? GO:0003735 ... P04456 30911188
    15 6q8y:AI (3.1) BS01 rna ? GO:0002181 ... P49167 30911188
    16 6q8y:AJ (3.1) BS01 rna ? GO:0002181 ... Q12690 30911188
    17 6q8y:AJ (3.1) BS02 rna ? GO:0002181 ... Q12690 30911188
    18 6q8y:AK (3.1) BS01 rna ? GO:0002181 ... P05743 30911188
    19 6q8y:AK (3.1) BS02 rna ? GO:0002181 ... P05743 30911188
    20 6q8y:AL (3.1) BS01 rna ? GO:0002181 ... P04650 30911188
    21 6q8y:AL (3.1) BS02 rna ? GO:0002181 ... P04650 30911188
    22 6q8y:AM (3.1) BS01 rna ? GO:0000027 ... P36105 30911188
    23 6q8y:AN (3.1) BS01 rna ? GO:0002181 ... P0C2H6 30911188
    24 6q8y:AO (3.1) BS01 rna ? GO:0003735 ... P0CH08 30911188
    25 6q8y:AO (3.1) BS02 ZN ? GO:0003735 ... P0CH08 30911188
    26 6q8y:AP (3.1) BS01 rna ? GO:0002181 ... P0CX27 30911188
    27 6q8y:AP (3.1) BS02 rna ? GO:0002181 ... P0CX27 30911188
    28 6q8y:AP (3.1) BS03 ZN ? GO:0002181 ... P0CX27 30911188
    29 6q8y:AQ (3.1) BS01 rna ? GO:0002181 ... P05748 30911188
    30 6q8y:AQ (3.1) BS02 rna ? GO:0002181 ... P05748 30911188
    31 6q8y:AR (3.1) BS01 rna ? GO:0002181 ... P02406 30911188
    32 6q8y:AT (3.1) BS01 rna ? GO:0002181 ... P0CX25 30911188
    33 6q8y:AT (3.1) BS02 ZN ? GO:0002181 ... P0CX25 30911188
    34 6q8y:AU (3.1) BS01 rna ? GO:0000470 ... P26784 30911188
    35 6q8y:AV (3.1) BS01 rna ? GO:0002181 ... P05747 30911188
    36 6q8y:AW (3.1) BS01 rna ? GO:0002181 ... P0CX45 30911188
    37 6q8y:AW (3.1) BS02 rna ? GO:0002181 ... P0CX45 30911188
    38 6q8y:AX (3.1) BS01 rna ? GO:0000448 ... P05740 30911188
    39 6q8y:AX (3.1) BS02 rna ? GO:0000448 ... P05740 30911188
    40 6q8y:AY (3.1) BS01 rna ? GO:0002181 ... P14120 30911188
    41 6q8y:B (3.1) BS01 rna ? GO:0000028 ... A0A1L4AA68 30911188
    42 6q8y:B (3.1) BS02 rna ? GO:0000028 ... A0A1L4AA68 30911188
    43 6q8y:B (3.1) BS03 rna ? GO:0000028 ... A0A1L4AA68 30911188
    44 6q8y:BA (3.1) BS01 rna ? GO:0000027 ... P14126 30911188
    45 6q8y:BB (3.1) BS01 rna ? GO:0002181 ... P0CX49 30911188
    46 6q8y:BC (3.1) BS01 rna ? GO:0002181 ... P0C2H8 30911188
    47 6q8y:BD (3.1) BS01 rna ? GO:0000027 ... P41805 30911188
    48 6q8y:BD (3.1) BS02 rna ? GO:0000027 ... P41805 30911188
    49 6q8y:BE (3.1) BS01 rna ? GO:0002181 ... P10664 30911188
    50 6q8y:BE (3.1) BS02 rna ? GO:0002181 ... P10664 30911188
    51 6q8y:BF (3.1) BS01 rna ? GO:0002181 ... P0CX82 30911188
    52 6q8y:BF (3.1) BS02 rna ? GO:0002181 ... P0CX82 30911188
    53 6q8y:BG (3.1) BS01 rna ? GO:0002181 ... P38061 30911188
    54 6q8y:BH (3.1) BS01 rna ? GO:0002181 ... P0CX23 30911188
    55 6q8y:BH (3.1) BS02 rna ? GO:0002181 ... P0CX23 30911188
    56 6q8y:BI (3.1) BS01 rna ? GO:0000027 ... P26321 30911188
    57 6q8y:BI (3.1) BS02 rna ? GO:0000027 ... P26321 30911188
    58 6q8y:BJ (3.1) BS01 rna ? GO:0002181 ... Q02753 30911188
    59 6q8y:BJ (3.1) BS02 rna ? GO:0002181 ... Q02753 30911188
    60 6q8y:BK (3.1) BS01 rna ? GO:0000027 ... P05744 30911188
    61 6q8y:BL (3.1) BS01 rna ? GO:0003735 ... P05749 30911188
    62 6q8y:BM (3.1) BS01 rna ? GO:0000027 ... Q02326 30911188
    63 6q8y:BN (3.1) BS01 rna ? GO:0002181 ... P87262 30911188
    64 6q8y:BN (3.1) BS02 ZN ? GO:0002181 ... P87262 30911188
    65 6q8y:BO (3.1) BS01 rna ? GO:0000463 ... P05737 30911188
    66 6q8y:BO (3.1) BS02 rna ? GO:0000463 ... P05737 30911188
    67 6q8y:BP (3.1) BS01 rna ? GO:0000463 ... P0CX84 30911188
    68 6q8y:BP (3.1) BS02 rna ? GO:0000463 ... P0CX84 30911188
    69 6q8y:C (3.1) BS01 rna ? GO:0000054 ... Q08745 30911188
    70 6q8y:D (3.1) BS01 rna ? GO:0003735 ... P48589 30911188
    71 6q8y:E (3.1) BS01 rna ? GO:0003723 ... Q01855 30911188
    72 6q8y:F (3.1) BS01 rna ? GO:0000462 ... P0CX51 30911188
    73 6q8y:G (3.1) BS01 rna ? GO:0000028 ... P02407 30911188
    74 6q8y:H (3.1) BS01 rna ? GO:0000054 ... P0CX55 30911188
    75 6q8y:H (3.1) BS02 rna ? GO:0000054 ... P0CX55 30911188
    76 6q8y:I (3.1) BS01 rna ? GO:0000028 ... P07280 30911188
    77 6q8y:J (3.1) BS01 rna ? GO:0003723 ... P38701 30911188
    78 6q8y:K (3.1) BS01 rna ? N/A Q3E792 30911188
    79 6q8y:L (3.1) BS01 rna ? GO:0000028 ... Q3E7X9 30911188
    80 6q8y:M (3.1) BS01 rna ? GO:0002181 ... P41057 30911188
    81 6q8y:M (3.1) BS02 ZN ? GO:0002181 ... P41057 30911188
    82 6q8y:N (3.1) BS01 rna ? GO:0003735 ... P05759 30911188
    83 6q8y:N (3.1) BS02 ZN ? GO:0003735 ... P05759 30911188
    84 6q8y:O (3.1) BS01 rna ? GO:0001965 ... P38011 30911188
    85 6q8y:P (3.1) BS01 rna ? GO:0003735 ... P32905 30911188
    86 6q8y:Q (3.1) BS01 rna ? GO:0003735 ... P33442 30911188
    87 6q8y:R (3.1) BS01 rna ? GO:0003723 ... P25443 30911188
    88 6q8y:S (3.1) BS01 rna ? GO:0002181 ... P0CX35 30911188
    89 6q8y:T (3.1) BS01 rna ? GO:0000462 ... P0CX37 30911188
    90 6q8y:U (3.1) BS01 rna ? GO:0002181 ... P26786 30911188
    91 6q8y:V (3.1) BS01 rna ? GO:0000462 ... P0CX39 30911188
    92 6q8y:V (3.1) BS02 rna ? GO:0000462 ... P0CX39 30911188
    93 6q8y:W (3.1) BS01 rna ? GO:0000462 ... O13516 30911188
    94 6q8y:X (3.1) BS01 rna ? GO:0000028 ... P0CX47 30911188
    95 6q8y:Y (3.1) BS01 rna ? GO:0000462 ... P05756 30911188
    96 6q8y:Z (3.1) BS01 rna ? GO:0000028 ... P39516 30911188
    97 6q8y:a (3.1) BS01 rna ? GO:0000447 ... P0C0V8 30911188
    98 6q8y:b (3.1) BS01 rna ? GO:0002181 ... P0C0W1 30911188
    99 6q8y:c (3.1) BS01 rna ? GO:0000462 ... P0CX29 30911188
    100 6q8y:d (3.1) BS01 rna ? GO:0000462 ... P0CX31 30911188
    101 6q8y:e (3.1) BS01 rna ? GO:0003735 ... P39939 30911188
    102 6q8y:e (3.1) BS02 rna ? GO:0003735 ... P39939 30911188
    103 6q8y:e (3.1) BS03 ZN ? GO:0003735 ... P39939 30911188
    104 6q8y:f (3.1) BS01 rna ? GO:0000028 ... P35997 30911188
    105 6q8y:g (3.1) BS01 rna ? GO:0002181 ... P0CX33 30911188
    106 6q8y:z (3.1) BS01 rna 3.1.13.- GO:0003676 ... P22147 30911188
    107 6q8y:z (3.1) BS02 rna 3.1.13.- GO:0003676 ... P22147 30911188
    108 6q8y:z (3.1) BS03 rna 3.1.13.- GO:0003676 ... P22147 30911188
    109 6q8y:z (3.1) BS04 MG 3.1.13.- GO:0003676 ... P22147 30911188
    110 6q8y:z (3.1) BS05 MG 3.1.13.- GO:0003676 ... P22147 30911188
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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