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BioLiP
Download all results in tab-seperated text for 19 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6pa7:A (2.94) BS01 dna ? GO:0000786 ... P84233 32968275
    2 6pa7:A (2.94) BS02 dna ? GO:0000786 ... P84233 32968275
    3 6pa7:B (2.94) BS01 dna ? GO:0000786 ... P62799 32968275
    4 6pa7:B (2.94) BS02 dna ? GO:0000786 ... P62799 32968275
    5 6pa7:C (2.94) BS01 dna ? GO:0000786 ... P06897 32968275
    6 6pa7:C (2.94) BS02 dna ? GO:0000786 ... P06897 32968275
    7 6pa7:D (2.94) BS01 dna ? GO:0000786 ... P02281 32968275
    8 6pa7:D (2.94) BS02 dna ? GO:0000786 ... P02281 32968275
    9 6pa7:E (2.94) BS01 dna ? GO:0000786 ... P84233 32968275
    10 6pa7:E (2.94) BS02 dna ? GO:0000786 ... P84233 32968275
    11 6pa7:F (2.94) BS01 dna ? GO:0000786 ... P62799 32968275
    12 6pa7:F (2.94) BS02 dna ? GO:0000786 ... P62799 32968275
    13 6pa7:G (2.94) BS01 dna ? GO:0000786 ... P06897 32968275
    14 6pa7:G (2.94) BS02 dna ? GO:0000786 ... P06897 32968275
    15 6pa7:H (2.94) BS01 dna ? GO:0000786 ... P02281 32968275
    16 6pa7:H (2.94) BS02 dna ? GO:0000786 ... P02281 32968275
    17 6pa7:K (2.94) BS01 dna 2.1.1.-
    2.1.1.37    		 GO:0008168 ... Q9Y6K1 32968275
    18 6pa7:K (2.94) BS02 SAH 2.1.1.-
    2.1.1.37    		 GO:0008168 ... Q9Y6K1 32968275 BindingDB: IC50=>50000nM
    19 6pa7:P (2.94) BS01 SAH 2.1.1.-
    2.1.1.37    		 GO:0008168 ... Q9Y6K1 32968275 BindingDB: IC50=>50000nM
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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