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BioLiP
Download all results in tab-seperated text for 98 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6p5n:AA (3.2) BS01 rna ? GO:0002181 ... G1TT27 31609474
    2 6p5n:AA (3.2) BS02 rna ? GO:0002181 ... G1TT27 31609474
    3 6p5n:AB (3.2) BS01 rna ? GO:0003723 ... G1TL06 31609474
    4 6p5n:AC (3.2) BS01 rna ? GO:0003723 ... G1SVW5 31609474
    5 6p5n:AC (3.2) BS02 rna ? GO:0003723 ... G1SVW5 31609474
    6 6p5n:AD (3.2) BS01 rna ? GO:0000027 ... P19949 31609474
    7 6p5n:AD (3.2) BS02 rna ? GO:0000027 ... P19949 31609474
    8 6p5n:AE (3.2) BS01 rna ? GO:0000027 ... G1SKF7 31609474
    9 6p5n:AF (3.2) BS01 rna ? GO:0000463 ... G1SV32 31609474
    10 6p5n:AF (3.2) BS02 rna ? GO:0000463 ... G1SV32 31609474
    11 6p5n:AG (3.2) BS01 rna ? N/A G1STW0 31609474
    12 6p5n:AG (3.2) BS02 rna ? N/A G1STW0 31609474
    13 6p5n:AH (3.2) BS01 rna ? GO:0002181 ... G1SWI6 31609474
    14 6p5n:AI (3.2) BS01 rna ? GO:0000027 ... B7NZQ2 31609474
    15 6p5n:AI (3.2) BS02 rna ? GO:0000027 ... B7NZQ2 31609474
    16 6p5n:AJ (3.2) BS01 rna ? GO:0003723 ... G1TUB8 31609474
    17 6p5n:AJ (3.2) BS02 rna ? GO:0003723 ... G1TUB8 31609474
    18 6p5n:AK (3.2) BS01 rna ? GO:0000470 ... G1SKZ8 31609474
    19 6p5n:AK (3.2) BS02 rna ? GO:0000470 ... G1SKZ8 31609474
    20 6p5n:AL (3.2) BS01 rna N/A GO:0003735 ... N/A 31609474
    21 6p5n:AL (3.2) BS02 rna N/A GO:0003735 ... N/A 31609474
    22 6p5n:AM (3.2) BS01 rna ? GO:0003723 ... G1SZ12 31609474
    23 6p5n:AN (3.2) BS01 rna ? GO:0002181 ... G1T0C1 31609474
    24 6p5n:AN (3.2) BS02 rna ? GO:0002181 ... G1T0C1 31609474
    25 6p5n:AO (3.2) BS01 rna N/A GO:0003735 ... N/A 31609474
    26 6p5n:AP (3.2) BS01 rna ? GO:0002181 ... G1SCJ6 31609474
    27 6p5n:AP (3.2) BS02 rna ? GO:0002181 ... G1SCJ6 31609474
    28 6p5n:AQ (3.2) BS01 rna N/A GO:0003735 ... N/A 31609474
    29 6p5n:AR (3.2) BS01 rna ? GO:0003723 ... G1TJR3 31609474
    30 6p5n:AR (3.2) BS02 rna ? GO:0003723 ... G1TJR3 31609474
    31 6p5n:AS (3.2) BS01 rna N/A GO:0003735 ... N/A 31609474
    32 6p5n:AS (3.2) BS02 rna N/A GO:0003735 ... N/A 31609474
    33 6p5n:AT (3.2) BS01 rna ? GO:0003735 ... G1SHQ2 31609474
    34 6p5n:AT (3.2) BS02 rna ? GO:0003735 ... G1SHQ2 31609474
    35 6p5n:AU (3.2) BS01 rna ? GO:0002181 ... G1TSG1 31609474
    36 6p5n:AV (3.2) BS01 rna ? GO:0000122 ... G1T6D1 31609474
    37 6p5n:AW (3.2) BS01 rna ? GO:0000027 ... G1SE28 31609474
    38 6p5n:AX (3.2) BS01 rna ? GO:0000027 ... G1SE76 31609474
    39 6p5n:AX (3.2) BS02 rna ? GO:0000027 ... G1SE76 31609474
    40 6p5n:AY (3.2) BS01 rna ? GO:0002181 ... G1SQH0 31609474
    41 6p5n:AY (3.2) BS02 rna ? GO:0002181 ... G1SQH0 31609474
    42 6p5n:AZ (3.2) BS01 rna ? GO:0003735 ... G1TXF6 31609474
    43 6p5n:Aa (3.2) BS01 rna ? GO:0003735 ... G1SNY0 31609474
    44 6p5n:Ab (3.2) BS01 rna ? GO:0002181 ... G1SGR6 31609474
    45 6p5n:Ac (3.2) BS01 rna ? GO:0002181 ... G1TDL2 31609474
    46 6p5n:Ad (3.2) BS01 rna ? GO:0002181 ... G1SHG0 31609474
    47 6p5n:Ae (3.2) BS01 rna ? GO:0003735 ... G1TUN8 31609474
    48 6p5n:Af (3.2) BS01 rna ? GO:0000049 ... G1SF08 31609474
    49 6p5n:Ag (3.2) BS01 rna ? GO:0003735 ... G1TXG5 31609474
    50 6p5n:Ah (3.2) BS01 rna ? GO:0000463 ... G1SIT5 31609474
    51 6p5n:Ah (3.2) BS02 rna ? GO:0000463 ... G1SIT5 31609474
    52 6p5n:Ai (3.2) BS01 rna ? GO:0002181 ... G1TTQ5 31609474
    53 6p5n:Aj (3.2) BS01 rna ? GO:0003723 ... U3KPD5 31609474
    54 6p5n:Aj (3.2) BS02 rna ? GO:0003723 ... U3KPD5 31609474
    55 6p5n:Ak (3.2) BS01 rna N/A GO:0003735 ... N/A 31609474
    56 6p5n:Al (3.2) BS01 rna ? GO:0003735 ... G1TTN1 31609474
    57 6p5n:Al (3.2) BS02 rna ? GO:0003735 ... G1TTN1 31609474
    58 6p5n:Am (3.2) BS01 rna N/A GO:0003735 ... N/A 31609474
    59 6p5n:Ao (3.2) BS01 rna ? GO:0003735 ... G1T040 31609474
    60 6p5n:Ap (3.2) BS01 rna ? GO:0003735 ... G1SY53 31609474
    61 6p5n:Aq (3.2) BS01 rna N/A GO:0003747 ... N/A 31609474
    62 6p5n:Aq (3.2) BS02 rna N/A GO:0003747 ... N/A 31609474
    63 6p5n:Aq (3.2) BS03 rna N/A GO:0003747 ... N/A 31609474
    64 6p5n:Ar (3.2) BS01 rna ? GO:0003735 ... G1U7L1 31609474
    65 6p5n:B (3.2) BS01 rna N/A GO:0003735 ... N/A 31609474
    66 6p5n:C (3.2) BS01 rna ? GO:0003735 ... G1SS70 31609474
    67 6p5n:D (3.2) BS01 rna N/A GO:0003723 ... N/A 31609474
    68 6p5n:E (3.2) BS01 rna 4.2.99.18 GO:0003677 ... G1TNM3 31609474
    69 6p5n:F (3.2) BS01 rna ? GO:0003723 ... G1TK17 31609474
    70 6p5n:G (3.2) BS01 rna ? GO:0000028 ... G1TFM5 31609474
    71 6p5n:H (3.2) BS01 rna ? GO:0000082 ... G1TM55 31609474
    72 6p5n:I (3.2) BS01 rna ? GO:0003735 ... G1SVB0 31609474
    73 6p5n:J (3.2) BS01 rna N/A GO:0003735 ... N/A 31609474
    74 6p5n:J (3.2) BS02 rna N/A GO:0003735 ... N/A 31609474
    75 6p5n:K (3.2) BS01 rna ? GO:0003723 ... B7NZS8 31609474
    76 6p5n:L (3.2) BS01 rna ? GO:0003723 ... G1TPV3 31609474
    77 6p5n:M (3.2) BS01 rna ? GO:0003735 ... G1TRM4 31609474
    78 6p5n:N (3.2) BS01 rna ? GO:0003735 ... G1SFR8 31609474
    79 6p5n:O (3.2) BS01 rna ? GO:0003735 ... G1SP51 31609474
    80 6p5n:O (3.2) BS02 rna ? GO:0003735 ... G1SP51 31609474
    81 6p5n:P (3.2) BS01 rna ? GO:0000028 ... G1T1F0 31609474
    82 6p5n:Q (3.2) BS01 rna ? GO:0000028 ... G1U0Q2 31609474
    83 6p5n:R (3.2) BS01 rna ? GO:0000462 ... G1SGX4 31609474
    84 6p5n:S (3.2) BS01 rna ? GO:0003735 ... G1TU13 31609474
    85 6p5n:T (3.2) BS01 rna ? GO:0003676 ... G1TPG3 31609474
    86 6p5n:U (3.2) BS01 rna ? GO:0000028 ... G1TN62 31609474
    87 6p5n:V (3.2) BS01 rna ? GO:0003723 ... G1SIZ2 31609474
    88 6p5n:X (3.2) BS01 rna ? GO:0003735 ... G1TG89 31609474
    89 6p5n:Y (3.2) BS01 rna ? GO:0003735 ... G1SZ47 31609474
    90 6p5n:Z (3.2) BS01 rna ? GO:0003735 ... G1T3D8 31609474
    91 6p5n:a (3.2) BS01 rna ? GO:0003735 ... G1TDB3 31609474
    92 6p5n:b (3.2) BS01 rna ? GO:0003729 ... G1TFE8 31609474
    93 6p5n:c (3.2) BS01 rna ? GO:0000028 ... G1TZ76 31609474
    94 6p5n:d (3.2) BS01 rna ? GO:0000028 ... G1TIB4 31609474
    95 6p5n:e (3.2) BS01 rna ? GO:0003735 ... G1U7M4 31609474
    96 6p5n:f (3.2) BS01 rna ? GO:0003735 ... G1T8A2 31609474
    97 6p5n:g (3.2) BS01 rna ? GO:0003723 ... G1SK22 31609474
    98 6p5n:h (3.2) BS01 rna ? GO:0001891 ... G1SJB4 31609474
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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