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BioLiP
Download all results in tab-seperated text for 65 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6ore:B (2.9) BS01 rna ? GO:0000027 ... P60422 31189921
    2 6ore:C (2.9) BS01 rna ? GO:0000027 ... P60438 31189921
    3 6ore:D (2.9) BS01 rna ? GO:0001070 ... P60723 31189921
    4 6ore:E (2.9) BS01 rna ? GO:0000027 ... P62399 31189921
    5 6ore:E (2.9) BS02 rna ? GO:0000027 ... P62399 31189921
    6 6ore:E (2.9) BS03 rna ? GO:0000027 ... P62399 31189921
    7 6ore:F (2.9) BS01 rna ? GO:0000027 ... P0AG55 31189921
    8 6ore:G (2.9) BS01 rna ? GO:0002181 ... P0A7R1 31189921
    9 6ore:J (2.9) BS01 rna ? GO:0002181 ... P0AA10 31189921
    10 6ore:K (2.9) BS01 rna ? GO:0002181 ... P0ADY3 31189921
    11 6ore:K (2.9) BS02 rna ? GO:0002181 ... P0ADY3 31189921
    12 6ore:L (2.9) BS01 rna ? GO:0002181 ... P02413 31189921
    13 6ore:M (2.9) BS01 rna ? GO:0000027 ... P0ADY7 31189921
    14 6ore:M (2.9) BS02 rna ? GO:0000027 ... P0ADY7 31189921
    15 6ore:N (2.9) BS01 rna ? GO:0000027 ... P0AG44 31189921
    16 6ore:O (2.9) BS01 rna ? GO:0002181 ... P0C018 31189921
    17 6ore:O (2.9) BS02 rna ? GO:0002181 ... P0C018 31189921
    18 6ore:P (2.9) BS01 rna ? GO:0000027 ... P0A7K6 31189921
    19 6ore:P (2.9) BS02 rna ? GO:0000027 ... P0A7K6 31189921
    20 6ore:Q (2.9) BS01 rna ? GO:0000027 ... P0A7L3 31189921
    21 6ore:R (2.9) BS01 rna ? GO:0002181 ... P0AG48 31189921
    22 6ore:S (2.9) BS01 rna ? GO:0002181 ... P61175 31189921
    23 6ore:T (2.9) BS01 rna ? GO:0000027 ... P0ADZ0 31189921
    24 6ore:U (2.9) BS01 rna ? GO:0000027 ... P60624 31189921
    25 6ore:V (2.9) BS01 rna ? GO:0000027 ... P68919 31189921
    26 6ore:V (2.9) BS02 rna ? GO:0000027 ... P68919 31189921
    27 6ore:W (2.9) BS01 rna ? GO:0003735 ... P0A7L8 31189921
    28 6ore:W (2.9) BS02 rna ? GO:0003735 ... P0A7L8 31189921
    29 6ore:X (2.9) BS01 rna ? GO:0000027 ... P0A7M2 31189921
    30 6ore:Y (2.9) BS01 rna ? GO:0000027 ... P0A7M6 31189921
    31 6ore:Z (2.9) BS01 rna ? GO:0000027 ... P0AG51 31189921
    32 6ore:a (2.9) BS01 rna ? GO:0002181 ... P0A7M9 31189921
    33 6ore:a (2.9) BS02 rna ? GO:0002181 ... P0A7M9 31189921
    34 6ore:a (2.9) BS03 ZN ? GO:0002181 ... P0A7M9 31189921
    35 6ore:b (2.9) BS01 rna ? GO:0000027 ... P0A7N4 31189921
    36 6ore:c (2.9) BS01 rna ? GO:0000027 ... P0A7N9 31189921
    37 6ore:d (2.9) BS01 rna ? GO:0002181 ... P0A7P5 31189921
    38 6ore:e (2.9) BS01 rna ? GO:0002181 ... P0A7Q1 31189921
    39 6ore:f (2.9) BS01 rna ? GO:0002181 ... P0A7Q6 31189921
    40 6ore:f (2.9) BS02 ZN ? GO:0002181 ... P0A7Q6 31189921
    41 6ore:g (2.9) BS01 rna ? GO:0000028 ... P0A7V0 31189921
    42 6ore:h (2.9) BS01 rna ? GO:0003676 ... P0A7V3 31189921
    43 6ore:i (2.9) BS01 rna ? GO:0000028 ... P0A7V8 31189921
    44 6ore:i (2.9) BS02 MG ? GO:0000028 ... P0A7V8 31189921
    45 6ore:j (2.9) BS01 rna ? GO:0000028 ... P0A7W1 31189921
    46 6ore:k (2.9) BS01 rna ? GO:0003735 ... P02358 31189921
    47 6ore:l (2.9) BS01 rna ? GO:0003723 ... P02359 31189921
    48 6ore:m (2.9) BS01 rna ? GO:0000028 ... P0A7W7 31189921
    49 6ore:n (2.9) BS01 rna ? GO:0000049 ... P0A7X3 31189921
    50 6ore:n (2.9) BS02 rna ? GO:0000049 ... P0A7X3 31189921
    51 6ore:o (2.9) BS01 rna ? GO:0000049 ... P0A7R5 31189921
    52 6ore:p (2.9) BS01 rna ? GO:0002181 ... P0A7R9 31189921
    53 6ore:q (2.9) BS01 rna ? GO:0000049 ... P0A7S3 31189921
    54 6ore:r (2.9) BS01 rna ? GO:0000049 ... P0A7S9 31189921
    55 6ore:r (2.9) BS02 rna ? GO:0000049 ... P0A7S9 31189921
    56 6ore:r (2.9) BS03 MG ? GO:0000049 ... P0A7S9 31189921
    57 6ore:s (2.9) BS01 rna ? GO:0000028 ... P0AG59 31189921
    58 6ore:t (2.9) BS01 rna ? GO:0000028 ... P0ADZ4 31189921
    59 6ore:t (2.9) BS02 rna ? GO:0000028 ... P0ADZ4 31189921
    60 6ore:u (2.9) BS01 rna ? GO:0000028 ... P0A7T3 31189921
    61 6ore:v (2.9) BS01 rna ? GO:0000028 ... P0AG63 31189921
    62 6ore:w (2.9) BS01 rna ? GO:0003735 ... P0A7T7 31189921
    63 6ore:x (2.9) BS01 rna ? GO:0000028 ... P0A7U3 31189921
    64 6ore:y (2.9) BS01 rna ? GO:0000028 ... P0A7U7 31189921
    65 6ore:z (2.9) BS01 rna ? GO:0000028 ... P68679 31189921
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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