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BioLiP
Download all results in tab-seperated text for 105 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6om0:A (3.1) BS01 rna ? GO:0002181 ... P62917 31160784
    2 6om0:B (3.1) BS01 rna ? GO:0002181 ... P39023 31160784
    3 6om0:C (3.1) BS01 rna ? GO:0003735 ... P36578 31160784
    4 6om0:C (3.1) BS02 rna ? GO:0003735 ... P36578 31160784
    5 6om0:C (3.1) BS03 peptide ? GO:0003735 ... P36578 31160784
    6 6om0:F (3.1) BS01 rna ? GO:0000027 ... P46777 31160784
    7 6om0:F (3.1) BS02 rna ? GO:0000027 ... P46777 31160784
    8 6om0:G (3.1) BS01 rna ? GO:0003735 ... Q02878 31160784
    9 6om0:H (3.1) BS01 rna ? GO:0000463 ... P18124 31160784
    10 6om0:H (3.1) BS02 rna ? GO:0000463 ... P18124 31160784
    11 6om0:I (3.1) BS01 rna ? GO:0042254 ... P62424 31160784
    12 6om0:I (3.1) BS02 rna ? GO:0042254 ... P62424 31160784
    13 6om0:J (3.1) BS01 rna ? GO:0002181 ... P32969 31160784
    14 6om0:K (3.1) BS01 rna ? GO:0000027 ... P27635 31160784
    15 6om0:K (3.1) BS02 rna ? GO:0000027 ... P27635 31160784
    16 6om0:K (3.1) BS03 rna ? GO:0000027 ... P27635 31160784
    17 6om0:L (3.1) BS01 rna ? GO:0000027 ... P62913 31160784
    18 6om0:L (3.1) BS02 rna ? GO:0000027 ... P62913 31160784
    19 6om0:M (3.1) BS01 rna ? GO:0001824 ... P26373 31160784
    20 6om0:M (3.1) BS02 rna ? GO:0001824 ... P26373 31160784
    21 6om0:N (3.1) BS01 rna ? GO:0003723 ... P50914 31160784
    22 6om0:O (3.1) BS01 rna ? GO:0002181 ... P61313 31160784
    23 6om0:O (3.1) BS02 rna ? GO:0002181 ... P61313 31160784
    24 6om0:P (3.1) BS01 rna ? GO:0002181 ... P40429 31160784
    25 6om0:Q (3.1) BS01 rna ? GO:0003735 ... P18621 31160784
    26 6om0:Q (3.1) BS02 rna ? GO:0003735 ... P18621 31160784
    27 6om0:R (3.1) BS01 rna ? GO:0002181 ... Q07020 31160784
    28 6om0:S (3.1) BS01 rna ? GO:0002181 ... P84098 31160784
    29 6om0:S (3.1) BS02 rna ? GO:0002181 ... P84098 31160784
    30 6om0:SA (3.1) BS01 rna ? GO:0003735 ... P08865 31160784
    31 6om0:SB (3.1) BS01 rna ? GO:0003735 ... P61247 31160784
    32 6om0:SB (3.1) BS02 rna ? GO:0003735 ... P61247 31160784
    33 6om0:SC (3.1) BS01 rna ? GO:0003723 ... P15880 31160784
    34 6om0:SD (3.1) BS01 rna 4.2.99.18 GO:0000977 ... P23396 31160784
    35 6om0:SE (3.1) BS01 rna ? GO:0002181 ... P62701 31160784
    36 6om0:SF (3.1) BS01 rna ? GO:0000028 ... P46782 31160784
    37 6om0:SG (3.1) BS01 rna ? GO:0000082 ... P62753 31160784
    38 6om0:SH (3.1) BS01 rna ? GO:0001843 ... P62081 31160784
    39 6om0:SI (3.1) BS01 rna ? GO:0000462 ... P62241 31160784
    40 6om0:SI (3.1) BS02 rna ? GO:0000462 ... P62241 31160784
    41 6om0:SJ (3.1) BS01 rna ? GO:0002181 ... P46781 31160784
    42 6om0:SK (3.1) BS01 rna ? N/A P46783 31160784
    43 6om0:SL (3.1) BS01 rna ? GO:0002181 ... P62280 31160784
    44 6om0:SM (3.1) BS01 rna ? GO:0003735 ... P25398 31160784
    45 6om0:SN (3.1) BS01 rna ? GO:0002181 ... P62277 31160784
    46 6om0:SN (3.1) BS02 rna ? GO:0002181 ... P62277 31160784
    47 6om0:SO (3.1) BS01 rna ? GO:0000028 ... P62263 31160784
    48 6om0:SP (3.1) BS01 rna ? GO:0003723 ... P62841 31160784
    49 6om0:SP (3.1) BS02 rna ? GO:0003723 ... P62841 31160784
    50 6om0:SQ (3.1) BS01 rna ? GO:0000462 ... P62249 31160784
    51 6om0:SR (3.1) BS01 rna ? GO:0002181 ... P08708 31160784
    52 6om0:SS (3.1) BS01 rna ? GO:0002181 ... P62269 31160784
    53 6om0:ST (3.1) BS01 rna ? GO:0000028 ... P39019 31160784
    54 6om0:SU (3.1) BS01 rna ? GO:0003723 ... P60866 31160784
    55 6om0:SV (3.1) BS01 rna ? GO:0000447 ... P63220 31160784
    56 6om0:SW (3.1) BS01 rna ? GO:0002181 ... P62244 31160784
    57 6om0:SX (3.1) BS01 rna ? GO:0002181 ... P62266 31160784
    58 6om0:SY (3.1) BS01 rna ? GO:0002181 ... P62847 31160784
    59 6om0:SZ (3.1) BS01 rna ? N/A P62851 31160784
    60 6om0:Sa (3.1) BS01 rna ? GO:0003735 ... P62854 31160784
    61 6om0:Sb (3.1) BS01 rna ? GO:0000028 ... P42677 31160784
    62 6om0:Sc (3.1) BS01 rna ? GO:0000028 ... P62857 31160784
    63 6om0:Sd (3.1) BS01 rna ? GO:0002181 ... P62273 31160784
    64 6om0:Se (3.1) BS01 rna ? GO:0003735 ... P62861 31160784
    65 6om0:Sf (3.1) BS01 rna ? GO:0003735 ... P62979 31160784
    66 6om0:Sf (3.1) BS02 ZN ? GO:0003735 ... P62979 31160784
    67 6om0:Sg (3.1) BS01 rna ? GO:0001891 ... P63244 31160784
    68 6om0:T (3.1) BS01 rna ? GO:0002181 ... Q02543 31160784
    69 6om0:T (3.1) BS02 rna ? GO:0002181 ... Q02543 31160784
    70 6om0:U (3.1) BS01 rna ? GO:0002181 ... P46778 31160784
    71 6om0:U (3.1) BS02 rna ? GO:0002181 ... P46778 31160784
    72 6om0:V (3.1) BS01 rna ? GO:0003735 ... P35268 31160784
    73 6om0:W (3.1) BS01 rna ? GO:0000122 ... P62829 31160784
    74 6om0:W (3.1) BS02 rna ? GO:0000122 ... P62829 31160784
    75 6om0:X (3.1) BS01 rna ? N/A P83731 31160784
    76 6om0:Y (3.1) BS01 rna ? GO:0003735 ... P62750 31160784
    77 6om0:Y (3.1) BS02 rna ? GO:0003735 ... P62750 31160784
    78 6om0:Z (3.1) BS01 rna ? GO:0002181 ... P61254 31160784
    79 6om0:Z (3.1) BS02 rna ? GO:0002181 ... P61254 31160784
    80 6om0:a (3.1) BS01 rna ? GO:0002181 ... P61353 31160784
    81 6om0:b (3.1) BS01 rna ? GO:0002181 ... P46776 31160784
    82 6om0:c (3.1) BS01 rna ? GO:0003735 ... P47914 31160784
    83 6om0:d (3.1) BS01 rna ? GO:0002181 ... P62888 31160784
    84 6om0:d (3.1) BS02 rna ? GO:0002181 ... P62888 31160784
    85 6om0:e (3.1) BS01 rna ? GO:0003735 ... P62899 31160784
    86 6om0:f (3.1) BS01 rna ? GO:0002181 ... P62910 31160784
    87 6om0:g (3.1) BS01 rna ? GO:0000049 ... P18077 31160784
    88 6om0:h (3.1) BS01 rna ? GO:0002181 ... P49207 31160784
    89 6om0:i (3.1) BS01 rna ? GO:0000463 ... P42766 31160784
    90 6om0:i (3.1) BS02 rna ? GO:0000463 ... P42766 31160784
    91 6om0:j (3.1) BS01 rna ? GO:0002181 ... Q9Y3U8 31160784
    92 6om0:k (3.1) BS01 rna ? GO:0003735 ... P61927 31160784
    93 6om0:k (3.1) BS02 rna ? GO:0003735 ... P61927 31160784
    94 6om0:k (3.1) BS03 ZN ? GO:0003735 ... P61927 31160784
    95 6om0:l (3.1) BS01 rna ? GO:0001501 ... P63173 31160784
    96 6om0:m (3.1) BS01 rna ? GO:0002181 ... P62891 31160784
    97 6om0:m (3.1) BS02 rna ? GO:0002181 ... P62891 31160784
    98 6om0:m (3.1) BS03 peptide ? GO:0002181 ... P62891 31160784
    99 6om0:n (3.1) BS01 rna ? GO:0003735 ... P62987 31160784
    100 6om0:p (3.1) BS01 rna ? GO:0002181 ... P83881 31160784
    101 6om0:p (3.1) BS02 rna ? GO:0002181 ... P83881 31160784
    102 6om0:p (3.1) BS03 ZN ? GO:0002181 ... P83881 31160784
    103 6om0:q (3.1) BS01 rna ? GO:0002181 ... P61513 31160784
    104 6om0:q (3.1) BS02 ZN ? GO:0002181 ... P61513 31160784
    105 6om0:r (3.1) BS01 rna ? GO:0003735 ... P46779 31160784
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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