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BioLiP
Download all results in tab-seperated text for 30 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6okk:B (3.3) BS01 rna ? GO:0003735 ... O97313 24913268
    2 6okk:C (3.3) BS01 rna ? GO:0000028 ... Q8IJD4 24913268
    3 6okk:D (3.3) BS01 rna ? GO:0003723 ... Q8IKH8 24913268
    4 6okk:E (3.3) BS01 rna ? GO:0003723 ... Q8I3R0 24913268
    5 6okk:F (3.3) BS01 rna ? GO:0003723 ... Q8IIU8 24913268
    6 6okk:G (3.3) BS01 rna ? GO:0003723 ... Q8IL02 24913268
    7 6okk:H (3.3) BS01 rna ? GO:0003735 ... Q8IDR9 24913268
    8 6okk:I (3.3) BS01 rna ? GO:0000028 ... Q8IBN5 24913268
    9 6okk:J (3.3) BS01 rna ? GO:0003735 ... Q8IET7 24913268
    10 6okk:K (3.3) BS01 rna ? GO:0003735 ... O77395 24913268
    11 6okk:L (3.3) BS01 rna ? GO:0000462 ... Q8IM10 24913268
    12 6okk:M (3.3) BS01 rna ? GO:0000462 ... A0A0L7M7C8 24913268
    13 6okk:N (3.3) BS01 rna ? GO:0003735 ... Q8IK02 24913268
    14 6okk:O (3.3) BS01 rna ? GO:0003723 ... Q8IBQ5 24913268
    15 6okk:P (3.3) BS01 rna N/A GO:0003735 ... N/A 24913268
    16 6okk:Q (3.3) BS01 rna ? GO:0003735 ... O97248 24913268
    17 6okk:S (3.3) BS01 rna ? GO:0003676 ... Q8IIA2 24913268
    18 6okk:T (3.3) BS01 rna ? GO:0002181 ... C0H4K8 24913268
    19 6okk:U (3.3) BS01 rna ? GO:0003735 ... Q8IDB0 24913268
    20 6okk:V (3.3) BS01 rna ? GO:0003735 ... O77381 24913268
    21 6okk:W (3.3) BS01 rna ? GO:0003735 ... Q8I502 24913268
    22 6okk:X (3.3) BS01 rna ? GO:0000028 ... C0H5C2 24913268
    23 6okk:Y (3.3) BS01 rna ? GO:0000028 ... Q8IFP2 24913268
    24 6okk:Z (3.3) BS01 rna ? GO:0000447 ... Q8IHS5 24913268
    25 6okk:a (3.3) BS01 rna ? GO:0003735 ... Q8I3R6 24913268
    26 6okk:b (3.3) BS01 rna ? GO:0003735 ... Q8ILN8 24913268
    27 6okk:c (3.3) BS01 rna ? GO:0003729 ... O96258 24913268
    28 6okk:d (3.3) BS01 rna ? GO:0000028 ... Q8IEN2 24913268
    29 6okk:e (3.3) BS01 rna ? GO:0000028 ... Q8IKL9 24913268
    30 6okk:f (3.3) BS01 rna ? GO:0003735 ... O96269 24913268
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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