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BioLiP
Download all results in tab-seperated text for 63 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6ogf:8 (3.9) BS01 rna ? GO:0003747 ... P07012 31513010
    2 6ogf:8 (3.9) BS02 rna ? GO:0003747 ... P07012 31513010
    3 6ogf:8 (3.9) BS03 rna ? GO:0003747 ... P07012 31513010
    4 6ogf:8 (3.9) BS04 rna ? GO:0003747 ... P07012 31513010
    5 6ogf:B (3.9) BS01 rna ? GO:0000027 ... P0A7N4 31513010
    6 6ogf:C (3.9) BS01 rna ? GO:0000027 ... P0A7N9 31513010
    7 6ogf:D (3.9) BS01 rna ? GO:0002181 ... P0A7P5 31513010
    8 6ogf:E (3.9) BS01 rna ? GO:0002181 ... P0A7Q1 31513010
    9 6ogf:F (3.9) BS01 rna ? GO:0002181 ... P0A7Q6 31513010
    10 6ogf:G (3.9) BS01 rna ? GO:0000028 ... P0A7V0 31513010
    11 6ogf:H (3.9) BS01 rna ? GO:0000028 ... P0A7V3 31513010
    12 6ogf:I (3.9) BS01 rna ? GO:0000028 ... P0A7V8 31513010
    13 6ogf:J (3.9) BS01 rna ? GO:0000028 ... P0A7W1 31513010
    14 6ogf:K (3.9) BS01 rna ? GO:0002181 ... P02358 31513010
    15 6ogf:L (3.9) BS01 rna ? GO:0003723 ... P02359 31513010
    16 6ogf:M (3.9) BS01 rna ? GO:0000028 ... P0A7W7 31513010
    17 6ogf:N (3.9) BS01 rna ? GO:0000049 ... P0A7X3 31513010
    18 6ogf:O (3.9) BS01 rna ? GO:0000049 ... P0A7R5 31513010
    19 6ogf:P (3.9) BS01 rna ? GO:0002181 ... P0A7R9 31513010
    20 6ogf:Q (3.9) BS01 rna ? GO:0000049 ... P0A7S3 31513010
    21 6ogf:R (3.9) BS01 rna ? GO:0000049 ... P0A7S9 31513010
    22 6ogf:S (3.9) BS01 rna ? GO:0000028 ... P0AG59 31513010
    23 6ogf:T (3.9) BS01 rna ? GO:0000028 ... P0ADZ4 31513010
    24 6ogf:T (3.9) BS02 rna ? GO:0000028 ... P0ADZ4 31513010
    25 6ogf:U (3.9) BS01 rna ? GO:0000028 ... P0A7T3 31513010
    26 6ogf:V (3.9) BS01 rna ? GO:0000028 ... P0AG63 31513010
    27 6ogf:W (3.9) BS01 rna ? GO:0002181 ... P0A7T7 31513010
    28 6ogf:X (3.9) BS01 rna ? GO:0000028 ... P0A7U3 31513010
    29 6ogf:Y (3.9) BS01 rna ? GO:0000028 ... P0A7U7 31513010
    30 6ogf:Z (3.9) BS01 rna ? GO:0000028 ... P68679 31513010
    31 6ogf:Z (3.9) BS02 rna ? GO:0000028 ... P68679 31513010
    32 6ogf:a (3.9) BS01 rna ? GO:0000027 ... P0A7L0 31513010
    33 6ogf:b (3.9) BS01 rna ? GO:0000027 ... P60422 31513010
    34 6ogf:c (3.9) BS01 rna ? GO:0000027 ... P60438 31513010
    35 6ogf:d (3.9) BS01 rna ? GO:0001070 ... P60723 31513010
    36 6ogf:e (3.9) BS01 rna ? GO:0000027 ... P62399 31513010
    37 6ogf:e (3.9) BS02 rna ? GO:0000027 ... P62399 31513010
    38 6ogf:f (3.9) BS01 rna ? GO:0000027 ... P0AG55 31513010
    39 6ogf:g (3.9) BS01 rna ? GO:0002181 ... P0A7R1 31513010
    40 6ogf:j (3.9) BS01 rna ? GO:0002181 ... P0AA10 31513010
    41 6ogf:k (3.9) BS01 rna ? GO:0002181 ... P0ADY3 31513010
    42 6ogf:k (3.9) BS02 rna ? GO:0002181 ... P0ADY3 31513010
    43 6ogf:l (3.9) BS01 rna ? GO:0002181 ... P02413 31513010
    44 6ogf:m (3.9) BS01 rna ? GO:0000027 ... P0ADY7 31513010
    45 6ogf:m (3.9) BS02 rna ? GO:0000027 ... P0ADY7 31513010
    46 6ogf:n (3.9) BS01 rna ? GO:0000027 ... P0AG44 31513010
    47 6ogf:o (3.9) BS01 rna ? GO:0002181 ... P0C018 31513010
    48 6ogf:o (3.9) BS02 rna ? GO:0002181 ... P0C018 31513010
    49 6ogf:p (3.9) BS01 rna ? GO:0000027 ... P0A7K6 31513010
    50 6ogf:p (3.9) BS02 rna ? GO:0000027 ... P0A7K6 31513010
    51 6ogf:q (3.9) BS01 rna ? GO:0000027 ... P0A7L3 31513010
    52 6ogf:r (3.9) BS01 rna ? GO:0002181 ... P0AG48 31513010
    53 6ogf:s (3.9) BS01 rna ? GO:0002181 ... P61175 31513010
    54 6ogf:t (3.9) BS01 rna ? GO:0000027 ... P0ADZ0 31513010
    55 6ogf:u (3.9) BS01 rna ? GO:0000027 ... P60624 31513010
    56 6ogf:v (3.9) BS01 rna ? GO:0000027 ... P68919 31513010
    57 6ogf:v (3.9) BS02 rna ? GO:0000027 ... P68919 31513010
    58 6ogf:w (3.9) BS01 rna ? GO:0000027 ... P0A7L8 31513010
    59 6ogf:w (3.9) BS02 rna ? GO:0000027 ... P0A7L8 31513010
    60 6ogf:x (3.9) BS01 rna ? GO:0000027 ... P0A7M2 31513010
    61 6ogf:y (3.9) BS01 rna ? GO:0000027 ... P0A7M6 31513010
    62 6ogf:z (3.9) BS01 rna ? GO:0000027 ... P0AG51 31513010
    63 6ogf:z (3.9) BS02 rna ? GO:0000027 ... P0AG51 31513010
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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