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BioLiP
Download all results in tab-seperated text for 63 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6o9k:0 (4.0) BS01 rna ? GO:0000027 ... P0A7L8 31108498
    2 6o9k:0 (4.0) BS02 rna ? GO:0000027 ... P0A7L8 31108498
    3 6o9k:1 (4.0) BS01 rna ? GO:0000027 ... P0A7M2 31108498
    4 6o9k:2 (4.0) BS01 rna ? GO:0000027 ... P0A7M6 31108498
    5 6o9k:3 (4.0) BS01 rna ? GO:0000027 ... P0AG51 31108498
    6 6o9k:3 (4.0) BS02 rna ? GO:0000027 ... P0AG51 31108498
    7 6o9k:4 (4.0) BS01 rna ? GO:0000027 ... P60438 31108498
    8 6o9k:5 (4.0) BS01 rna ? GO:0000027 ... P0A7N4 31108498
    9 6o9k:6 (4.0) BS01 rna ? GO:0000027 ... P0A7N9 31108498
    10 6o9k:7 (4.0) BS01 rna ? GO:0002181 ... P0A7P5 31108498
    11 6o9k:8 (4.0) BS01 rna ? GO:0002181 ... P0A7Q1 31108498
    12 6o9k:9 (4.0) BS01 rna ? GO:0000027 ... P60422 31108498
    13 6o9k:E (4.0) BS01 rna ? GO:0001070 ... P60723 31108498
    14 6o9k:F (4.0) BS01 rna ? GO:0000027 ... P62399 31108498
    15 6o9k:F (4.0) BS02 rna ? GO:0000027 ... P62399 31108498
    16 6o9k:F (4.0) BS03 rna ? GO:0000027 ... P62399 31108498
    17 6o9k:G (4.0) BS01 rna ? GO:0003735 ... P0A7J3 31108498
    18 6o9k:H (4.0) BS01 rna ? GO:0000027 ... P0AG55 31108498
    19 6o9k:I (4.0) BS01 rna ? GO:0000027 ... P0A7J7 31108498
    20 6o9k:J (4.0) BS01 rna ? GO:0002181 ... P0AA10 31108498
    21 6o9k:K (4.0) BS01 rna ? GO:0002181 ... P0ADY3 31108498
    22 6o9k:K (4.0) BS02 rna ? GO:0002181 ... P0ADY3 31108498
    23 6o9k:L (4.0) BS01 rna ? GO:0002181 ... P02413 31108498
    24 6o9k:M (4.0) BS01 rna ? GO:0000027 ... P0ADY7 31108498
    25 6o9k:M (4.0) BS02 rna ? GO:0000027 ... P0ADY7 31108498
    26 6o9k:N (4.0) BS01 rna ? GO:0000027 ... P0AG44 31108498
    27 6o9k:O (4.0) BS01 rna ? GO:0002181 ... P0C018 31108498
    28 6o9k:O (4.0) BS02 rna ? GO:0002181 ... P0C018 31108498
    29 6o9k:P (4.0) BS01 rna ? GO:0000027 ... P0A7K6 31108498
    30 6o9k:P (4.0) BS02 rna ? GO:0000027 ... P0A7K6 31108498
    31 6o9k:Q (4.0) BS01 rna ? GO:0000027 ... P0A7L3 31108498
    32 6o9k:R (4.0) BS01 rna ? GO:0002181 ... P0AG48 31108498
    33 6o9k:S (4.0) BS01 rna ? GO:0002181 ... P61175 31108498
    34 6o9k:T (4.0) BS01 rna ? GO:0000027 ... P0ADZ0 31108498
    35 6o9k:U (4.0) BS01 rna ? GO:0000027 ... P60624 31108498
    36 6o9k:V (4.0) BS01 rna ? GO:0000027 ... P68919 31108498
    37 6o9k:V (4.0) BS02 rna ? GO:0000027 ... P68919 31108498
    38 6o9k:Y (4.0) BS01 rna ? GO:0002181 ... P0A7Q6 31108498
    39 6o9k:b (4.0) BS01 rna ? GO:0000028 ... P0A7V0 31108498
    40 6o9k:c (4.0) BS01 rna ? GO:0003676 ... P0A7V3 31108498
    41 6o9k:d (4.0) BS01 rna ? GO:0000028 ... P0A7V8 31108498
    42 6o9k:e (4.0) BS01 rna ? GO:0000028 ... P0A7W1 31108498
    43 6o9k:f (4.0) BS01 rna ? GO:0003735 ... P02358 31108498
    44 6o9k:g (4.0) BS01 rna ? GO:0003723 ... P02359 31108498
    45 6o9k:h (4.0) BS01 rna ? GO:0000028 ... P0A7W7 31108498
    46 6o9k:i (4.0) BS01 rna ? GO:0000049 ... P0A7X3 31108498
    47 6o9k:i (4.0) BS02 rna ? GO:0000049 ... P0A7X3 31108498
    48 6o9k:j (4.0) BS01 rna ? GO:0000049 ... P0A7R5 31108498
    49 6o9k:k (4.0) BS01 rna ? GO:0002181 ... P0A7R9 31108498
    50 6o9k:l (4.0) BS01 rna ? GO:0000049 ... P0A7S3 31108498
    51 6o9k:m (4.0) BS01 rna ? GO:0000049 ... P0A7S9 31108498
    52 6o9k:n (4.0) BS01 rna ? GO:0003735 ... P0AG59 31108498
    53 6o9k:o (4.0) BS01 rna ? GO:0000028 ... P0ADZ4 31108498
    54 6o9k:o (4.0) BS02 rna ? GO:0000028 ... P0ADZ4 31108498
    55 6o9k:p (4.0) BS01 rna ? GO:0000028 ... P0A7T3 31108498
    56 6o9k:q (4.0) BS01 rna ? GO:0000028 ... P0AG63 31108498
    57 6o9k:r (4.0) BS01 rna ? GO:0003735 ... P0A7T7 31108498
    58 6o9k:s (4.0) BS01 rna ? GO:0003723 ... P0A7U3 31108498
    59 6o9k:t (4.0) BS01 rna ? GO:0000028 ... P0A7U7 31108498
    60 6o9k:u (4.0) BS01 rna ? GO:0003735 ... P68679 31108498
    61 6o9k:z (4.0) BS01 rna ? GO:0003743 ... P0A705 31108498
    62 6o9k:z (4.0) BS02 rna ? GO:0003743 ... P0A705 31108498
    63 6o9k:z (4.0) BS03 rna ? GO:0003743 ... P0A705 31108498
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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