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BioLiP
Download all results in tab-seperated text for 16 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6o1k:A (3.13) BS01 rna 3.1.11.2 GO:0003824 ... Q51380 30758287
    2 6o1k:A (3.13) BS02 rna 3.1.11.2 GO:0003824 ... Q51380 30758287
    3 6o1k:B (3.13) BS01 rna 3.1.11.2 GO:0003824 ... Q51380 30758287
    4 6o1k:B (3.13) BS02 rna 3.1.11.2 GO:0003824 ... Q51380 30758287
    5 6o1k:C (3.13) BS01 rna ? GO:0003723 ... Q9HUM0 30758287
    6 6o1k:D (3.13) BS01 rna ? GO:0003723 ... Q9HUM0 30758287
    7 6o1k:E (3.13) BS01 rna ? GO:0003723 ... Q9HUM0 30758287
    8 6o1k:F (3.13) BS01 rna ? GO:0003723 ... Q9HUM0 30758287
    9 6o1k:G (3.13) BS01 rna ? GO:0003723 ... Q9HUM0 30758287
    10 6o1k:H (3.13) BS01 rna ? GO:0003723 ... Q9HUM0 30758287
    11 6o1k:I (3.13) BS01 rna ? GO:0003723 ... Q9HUM0 30758287
    12 6o1k:J (3.13) BS01 rna ? GO:0003723 ... Q9HUM0 30758287
    13 6o1k:K (3.13) BS01 rna ? GO:0003723 ... Q9HUM0 30758287
    14 6o1k:L (3.13) BS01 rna ? GO:0003723 ... Q9HUM0 30758287
    15 6o1k:M (3.13) BS01 rna ? GO:0003723 ... Q9HUM0 30758287
    16 6o1k:N (3.13) BS01 rna ? GO:0003723 ... Q9HUM0 30758287
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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