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BioLiP
Download all results in tab-seperated text for 62 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6n8k:A (3.6) BS01 rna ? GO:0002181 ... P0CX45 30814529
    2 6n8k:B (3.6) BS01 rna ? GO:0000027 ... P14126 30814529
    3 6n8k:C (3.6) BS01 rna ? GO:0002181 ... P10664 30814529
    4 6n8k:C (3.6) BS02 rna ? GO:0002181 ... P10664 30814529
    5 6n8k:D (3.6) BS01 rna ? GO:0000027 ... P26321 30814529
    6 6n8k:D (3.6) BS02 rna ? GO:0000027 ... P26321 30814529
    7 6n8k:E (3.6) BS01 rna ? GO:0000027 ... Q02326 30814529
    8 6n8k:F (3.6) BS01 rna ? GO:0000463 ... P05737 30814529
    9 6n8k:F (3.6) BS02 rna ? GO:0000463 ... P05737 30814529
    10 6n8k:G (3.6) BS01 rna ? GO:0000470 ... P17076 30814529
    11 6n8k:G (3.6) BS02 rna ? GO:0000470 ... P17076 30814529
    12 6n8k:H (3.6) BS01 rna ? GO:0002181 ... P05738 30814529
    13 6n8k:I (3.6) BS01 rna ? GO:0000055 ... Q08004 30814529
    14 6n8k:J (3.6) BS01 rna ? GO:0000027 ... P0C0W9 30814529
    15 6n8k:J (3.6) BS02 rna ? GO:0000027 ... P0C0W9 30814529
    16 6n8k:L (3.6) BS01 rna ? GO:0002181 ... Q12690 30814529
    17 6n8k:L (3.6) BS02 rna ? GO:0002181 ... Q12690 30814529
    18 6n8k:M (3.6) BS01 rna ? GO:0000027 ... P36105 30814529
    19 6n8k:N (3.6) BS01 rna ? GO:0002181 ... P05748 30814529
    20 6n8k:N (3.6) BS02 rna ? GO:0002181 ... P05748 30814529
    21 6n8k:O (3.6) BS01 rna ? GO:0000470 ... P26784 30814529
    22 6n8k:P (3.6) BS01 rna ? GO:0000448 ... P05740 30814529
    23 6n8k:P (3.6) BS02 rna ? GO:0000448 ... P05740 30814529
    24 6n8k:Q (3.6) BS01 rna ? GO:0002181 ... P0CX49 30814529
    25 6n8k:R (3.6) BS01 rna ? GO:0002181 ... P0CX82 30814529
    26 6n8k:S (3.6) BS01 rna ? GO:0002181 ... P0CX23 30814529
    27 6n8k:S (3.6) BS02 rna ? GO:0002181 ... P0CX23 30814529
    28 6n8k:T (3.6) BS01 rna ? GO:0002181 ... Q02753 30814529
    29 6n8k:U (3.6) BS01 rna ? GO:0002181 ... P05749 30814529
    30 6n8k:V (3.6) BS01 rna ? GO:0002181 ... P0CX41 30814529
    31 6n8k:W (3.6) BS01 rna ? GO:0000027 ... P33201 30814529
    32 6n8k:X (3.6) BS01 rna ? GO:0000027 ... P04456 30814529
    33 6n8k:X (3.6) BS02 rna ? GO:0000027 ... P04456 30814529
    34 6n8k:Y (3.6) BS01 rna ? GO:0002181 ... P05743 30814529
    35 6n8k:Y (3.6) BS02 rna ? GO:0002181 ... P05743 30814529
    36 6n8k:Z (3.6) BS01 rna ? GO:0002181 ... P0C2H6 30814529
    37 6n8k:a (3.6) BS01 rna ? GO:0002181 ... P02406 30814529
    38 6n8k:b (3.6) BS01 rna ? GO:0000054 ... Q02892 30814529
    39 6n8k:b (3.6) BS02 rna ? GO:0000054 ... Q02892 30814529
    40 6n8k:b (3.6) BS03 GTP ? GO:0000054 ... Q02892 30814529
    41 6n8k:b (3.6) BS04 MG ? GO:0000054 ... Q02892 30814529
    42 6n8k:c (3.6) BS01 rna ? GO:0002181 ... P14120 30814529
    43 6n8k:d (3.6) BS01 rna ? GO:0002181 ... P0C2H8 30814529
    44 6n8k:e (3.6) BS01 rna ? GO:0002181 ... P38061 30814529
    45 6n8k:f (3.6) BS01 rna ? GO:0000027 ... P05744 30814529
    46 6n8k:g (3.6) BS01 rna ? GO:0002181 ... P87262 30814529
    47 6n8k:h (3.6) BS01 rna ? GO:0000463 ... P0CX84 30814529
    48 6n8k:h (3.6) BS02 rna ? GO:0000463 ... P0CX84 30814529
    49 6n8k:i (3.6) BS01 rna ? GO:0002181 ... P05745 30814529
    50 6n8k:j (3.6) BS01 rna ? GO:0000448 ... P49166 30814529
    51 6n8k:j (3.6) BS02 rna ? GO:0000448 ... P49166 30814529
    52 6n8k:k (3.6) BS01 rna ? GO:0002181 ... P49167 30814529
    53 6n8k:l (3.6) BS01 rna ? GO:0002181 ... P04650 30814529
    54 6n8k:l (3.6) BS02 rna ? GO:0002181 ... P04650 30814529
    55 6n8k:o (3.6) BS01 rna ? GO:0002181 ... P05747 30814529
    56 6n8k:p (3.6) BS01 rna ? GO:0002181 ... P0CX25 30814529
    57 6n8k:q (3.6) BS01 rna ? GO:0002181 ... P0CX27 30814529
    58 6n8k:s (3.6) BS01 rna N/A N/A N/A 30814529
    59 6n8k:u (3.6) BS01 rna ? GO:0001671 ... Q07915 30814529
    60 6n8k:v (3.6) BS01 rna ? GO:0000055 ... P38861 30814529
    61 6n8k:y (3.6) BS01 rna ? GO:0000054 ... Q12522 30814529
    62 6n8k:z (3.6) BS01 rna ? GO:0003674 ... P38202 30814529
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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