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BioLiP
Download all results in tab-seperated text for 107 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6mtb:A (3.6) BS01 rna ? GO:0002181 ... G1TT27 30355441
    2 6mtb:A (3.6) BS02 rna ? GO:0002181 ... G1TT27 30355441
    3 6mtb:A (3.6) BS03 MG ? GO:0002181 ... G1TT27 30355441
    4 6mtb:AA (3.6) BS01 rna N/A GO:0003735 ... N/A 30355441
    5 6mtb:B (3.6) BS01 rna ? GO:0003723 ... G1TL06 30355441
    6 6mtb:BB (3.6) BS01 rna ? GO:0003735 ... G1SS70 30355441
    7 6mtb:C (3.6) BS01 rna ? GO:0003735 ... G1SVW5 30355441
    8 6mtb:C (3.6) BS02 rna ? GO:0003735 ... G1SVW5 30355441
    9 6mtb:CC (3.6) BS01 rna N/A GO:0003723 ... N/A 30355441
    10 6mtb:D (3.6) BS01 rna ? GO:0000027 ... P19949 30355441
    11 6mtb:D (3.6) BS02 rna ? GO:0000027 ... P19949 30355441
    12 6mtb:DD (3.6) BS01 rna N/A GO:0003723 ... N/A 30355441
    13 6mtb:E (3.6) BS01 rna ? GO:0000027 ... G1SKF7 30355441
    14 6mtb:EE (3.6) BS01 rna N/A GO:0003723 ... N/A 30355441
    15 6mtb:F (3.6) BS01 rna N/A GO:0000463 ... N/A 30355441
    16 6mtb:F (3.6) BS02 rna N/A GO:0000463 ... N/A 30355441
    17 6mtb:FF (3.6) BS01 rna ? GO:0000028 ... G1TFM5 30355441
    18 6mtb:G (3.6) BS01 rna N/A GO:0042254 ... N/A 30355441
    19 6mtb:G (3.6) BS02 rna N/A GO:0042254 ... N/A 30355441
    20 6mtb:GG (3.6) BS01 rna ? GO:0000082 ... G1TM55 30355441
    21 6mtb:H (3.6) BS01 rna ? GO:0002181 ... G1SWI6 30355441
    22 6mtb:HH (3.6) BS01 rna ? GO:0003735 ... G1SVB0 30355441
    23 6mtb:I (3.6) BS01 rna ? GO:0000027 ... B7NZQ2 30355441
    24 6mtb:I (3.6) BS02 rna ? GO:0000027 ... B7NZQ2 30355441
    25 6mtb:II (3.6) BS01 rna N/A GO:0003735 ... N/A 30355441
    26 6mtb:II (3.6) BS02 rna N/A GO:0003735 ... N/A 30355441
    27 6mtb:J (3.6) BS01 rna ? GO:0003723 ... G1TUB8 30355441
    28 6mtb:J (3.6) BS02 rna ? GO:0003723 ... G1TUB8 30355441
    29 6mtb:JJ (3.6) BS01 rna ? GO:0003723 ... B7NZS8 30355441
    30 6mtb:KK (3.6) BS01 rna ? N/A G1TPV3 30355441
    31 6mtb:L (3.6) BS01 rna N/A GO:0003735 ... N/A 30355441
    32 6mtb:L (3.6) BS02 rna N/A GO:0003735 ... N/A 30355441
    33 6mtb:LL (3.6) BS01 rna ? GO:0003735 ... G1TRM4 30355441
    34 6mtb:M (3.6) BS01 rna ? GO:0003723 ... G1SZ12 30355441
    35 6mtb:MM (3.6) BS01 rna ? GO:0003735 ... G1SFR8 30355441
    36 6mtb:N (3.6) BS01 rna ? GO:0002181 ... G1T0C1 30355441
    37 6mtb:N (3.6) BS02 rna ? GO:0002181 ... G1T0C1 30355441
    38 6mtb:NN (3.6) BS01 rna ? GO:0003735 ... G1SP51 30355441
    39 6mtb:NN (3.6) BS02 rna ? GO:0003735 ... G1SP51 30355441
    40 6mtb:O (3.6) BS01 rna N/A GO:0003735 ... N/A 30355441
    41 6mtb:OO (3.6) BS01 rna N/A GO:0003735 ... N/A 30355441
    42 6mtb:P (3.6) BS01 rna ? GO:0003735 ... G1SCJ6 30355441
    43 6mtb:P (3.6) BS02 rna ? GO:0003735 ... G1SCJ6 30355441
    44 6mtb:PP (3.6) BS01 rna ? GO:0003723 ... G1U0Q2 30355441
    45 6mtb:Q (3.6) BS01 rna N/A GO:0003735 ... N/A 30355441
    46 6mtb:QQ (3.6) BS01 rna N/A GO:0003735 ... N/A 30355441
    47 6mtb:R (3.6) BS01 rna N/A GO:0003723 ... N/A 30355441
    48 6mtb:R (3.6) BS02 rna N/A GO:0003723 ... N/A 30355441
    49 6mtb:RR (3.6) BS01 rna ? GO:0003735 ... G1TU13 30355441
    50 6mtb:S (3.6) BS01 rna N/A GO:0003735 ... N/A 30355441
    51 6mtb:S (3.6) BS02 rna N/A GO:0003735 ... N/A 30355441
    52 6mtb:SS (3.6) BS01 rna ? GO:0003676 ... G1TPG3 30355441
    53 6mtb:T (3.6) BS01 rna ? GO:0003735 ... G1SHQ2 30355441
    54 6mtb:T (3.6) BS02 rna ? GO:0003735 ... G1SHQ2 30355441
    55 6mtb:TT (3.6) BS01 rna N/A GO:0003735 ... N/A 30355441
    56 6mtb:U (3.6) BS01 rna N/A GO:0003735 ... N/A 30355441
    57 6mtb:UU (3.6) BS01 rna N/A GO:0003723 ... N/A 30355441
    58 6mtb:V (3.6) BS01 rna ? GO:0000122 ... G1T6D1 30355441
    59 6mtb:W (3.6) BS01 rna ? GO:0000027 ... G1SE28 30355441
    60 6mtb:W (3.6) BS02 rna ? GO:0000027 ... G1SE28 30355441
    61 6mtb:WW (3.6) BS01 rna ? GO:0003735 ... G1TG89 30355441
    62 6mtb:X (3.6) BS01 rna N/A GO:0003735 ... N/A 30355441
    63 6mtb:X (3.6) BS02 rna N/A GO:0003735 ... N/A 30355441
    64 6mtb:XX (3.6) BS01 rna N/A GO:0003735 ... N/A 30355441
    65 6mtb:Y (3.6) BS01 rna ? GO:0002181 ... G1SQH0 30355441
    66 6mtb:Y (3.6) BS02 rna ? GO:0002181 ... G1SQH0 30355441
    67 6mtb:YY (3.6) BS01 rna N/A GO:0003735 ... N/A 30355441
    68 6mtb:Z (3.6) BS01 rna ? GO:0003735 ... G1TXF6 30355441
    69 6mtb:ZZ (3.6) BS01 rna ? N/A G1TDB3 30355441
    70 6mtb:ZZ (3.6) BS02 rna ? N/A G1TDB3 30355441
    71 6mtb:a (3.6) BS01 rna ? GO:0003735 ... G1SNY0 30355441
    72 6mtb:aa (3.6) BS01 rna N/A GO:0003735 ... N/A 30355441
    73 6mtb:aa (3.6) BS02 ZN N/A GO:0003735 ... N/A 30355441
    74 6mtb:b (3.6) BS01 rna N/A GO:0003735 ... N/A 30355441
    75 6mtb:bb (3.6) BS01 rna N/A GO:0003735 ... N/A 30355441
    76 6mtb:c (3.6) BS01 rna ? GO:0003723 ... G1TDL2 30355441
    77 6mtb:cc (3.6) BS01 rna ? GO:0000028 ... G1TIB4 30355441
    78 6mtb:d (3.6) BS01 rna ? GO:0003735 ... G1SHG0 30355441
    79 6mtb:dd (3.6) BS01 rna ? GO:0003735 ... G1U7M4 30355441
    80 6mtb:dd (3.6) BS02 ZN ? GO:0003735 ... G1U7M4 30355441
    81 6mtb:e (3.6) BS01 rna ? GO:0003735 ... G1TUN8 30355441
    82 6mtb:ee (3.6) BS01 rna ? GO:0003735 ... G1T8A2 30355441
    83 6mtb:f (3.6) BS01 rna ? GO:0000049 ... G1SF08 30355441
    84 6mtb:ff (3.6) BS01 rna ? GO:0003735 ... G1SK22 30355441
    85 6mtb:ff (3.6) BS02 ZN ? GO:0003735 ... G1SK22 30355441
    86 6mtb:g (3.6) BS01 rna N/A GO:0003735 ... N/A 30355441
    87 6mtb:g (3.6) BS02 ZN N/A GO:0003735 ... N/A 30355441
    88 6mtb:gg (3.6) BS01 rna ? GO:0001891 ... G1SJB4 30355441
    89 6mtb:h (3.6) BS01 rna ? GO:0000463 ... G1SIT5 30355441
    90 6mtb:h (3.6) BS02 rna ? GO:0000463 ... G1SIT5 30355441
    91 6mtb:i (3.6) BS01 rna ? GO:0002181 ... G1TTQ5 30355441
    92 6mtb:j (3.6) BS01 rna ? GO:0003735 ... U3KPD5 30355441
    93 6mtb:j (3.6) BS02 rna ? GO:0003735 ... U3KPD5 30355441
    94 6mtb:j (3.6) BS03 ZN ? GO:0003735 ... U3KPD5 30355441
    95 6mtb:k (3.6) BS01 rna N/A GO:0003735 ... N/A 30355441
    96 6mtb:l (3.6) BS01 rna ? GO:0003735 ... G1TTN1 30355441
    97 6mtb:l (3.6) BS02 rna ? GO:0003735 ... G1TTN1 30355441
    98 6mtb:m (3.6) BS01 rna N/A GO:0003735 ... N/A 30355441
    99 6mtb:m (3.6) BS02 ZN N/A GO:0003735 ... N/A 30355441
    100 6mtb:o (3.6) BS01 rna ? GO:0003735 ... G1T040 30355441
    101 6mtb:o (3.6) BS02 rna ? GO:0003735 ... G1T040 30355441
    102 6mtb:o (3.6) BS03 ZN ? GO:0003735 ... G1T040 30355441
    103 6mtb:p (3.6) BS01 rna ? GO:0003735 ... G1SY53 30355441
    104 6mtb:p (3.6) BS02 ZN ? GO:0003735 ... G1SY53 30355441
    105 6mtb:r (3.6) BS01 rna ? GO:0003735 ... G1U7L1 30355441
    106 6mtb:u (3.6) BS01 rna ? GO:0000470 ... G1SKZ8 30355441
    107 6mtb:u (3.6) BS02 rna ? GO:0000470 ... G1SKZ8 30355441
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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