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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 539 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6ly5:A (2.38) BS01 DD6 ? GO:0009765 ... A0A6J4B7P2 33033236
    2 6ly5:A (2.38) BS02 A86 ? GO:0009765 ... A0A6J4B7P2 33033236
    3 6ly5:A (2.38) BS03 DD6 ? GO:0009765 ... A0A6J4B7P2 33033236
    4 6ly5:A (2.38) BS04 DD6 ? GO:0009765 ... A0A6J4B7P2 33033236
    5 6ly5:A (2.38) BS05 CLA ? GO:0009765 ... A0A6J4B7P2 33033236
    6 6ly5:A (2.38) BS06 CLA ? GO:0009765 ... A0A6J4B7P2 33033236
    7 6ly5:A (2.38) BS07 CLA ? GO:0009765 ... A0A6J4B7P2 33033236
    8 6ly5:A (2.38) BS08 CLA ? GO:0009765 ... A0A6J4B7P2 33033236
    9 6ly5:A (2.38) BS09 CLA ? GO:0009765 ... A0A6J4B7P2 33033236
    10 6ly5:A (2.38) BS10 CLA ? GO:0009765 ... A0A6J4B7P2 33033236
    11 6ly5:A (2.38) BS11 CLA ? GO:0009765 ... A0A6J4B7P2 33033236
    12 6ly5:A (2.38) BS12 KC1 ? GO:0009765 ... A0A6J4B7P2 33033236
    13 6ly5:A (2.38) BS13 CLA ? GO:0009765 ... A0A6J4B7P2 33033236
    14 6ly5:A (2.38) BS14 CLA ? GO:0009765 ... A0A6J4B7P2 33033236
    15 6ly5:A (2.38) BS15 A86 ? GO:0009765 ... A0A6J4B7P2 33033236
    16 6ly5:A (2.38) BS16 DD6 ? GO:0009765 ... A0A6J4B7P2 33033236
    17 6ly5:A (2.38) BS17 CLA ? GO:0009765 ... A0A6J4B7P2 33033236
    18 6ly5:A (2.38) BS18 CLA ? GO:0009765 ... A0A6J4B7P2 33033236
    19 6ly5:B (2.38) BS01 A86 ? N/A A0A1E7F4Y9 33033236
    20 6ly5:B (2.38) BS02 DD6 ? N/A A0A1E7F4Y9 33033236
    21 6ly5:B (2.38) BS03 A86 ? N/A A0A1E7F4Y9 33033236
    22 6ly5:B (2.38) BS04 DD6 ? N/A A0A1E7F4Y9 33033236
    23 6ly5:B (2.38) BS05 CLA ? N/A A0A1E7F4Y9 33033236
    24 6ly5:B (2.38) BS06 CLA ? N/A A0A1E7F4Y9 33033236
    25 6ly5:B (2.38) BS07 CLA ? N/A A0A1E7F4Y9 33033236
    26 6ly5:B (2.38) BS08 CLA ? N/A A0A1E7F4Y9 33033236
    27 6ly5:B (2.38) BS09 KC1 ? N/A A0A1E7F4Y9 33033236
    28 6ly5:B (2.38) BS10 CLA ? N/A A0A1E7F4Y9 33033236
    29 6ly5:B (2.38) BS11 CLA ? N/A A0A1E7F4Y9 33033236
    30 6ly5:C (2.38) BS01 DD6 ? GO:0009765 ... A0A6J4B024 33033236
    31 6ly5:C (2.38) BS02 A86 ? GO:0009765 ... A0A6J4B024 33033236
    32 6ly5:C (2.38) BS03 A86 ? GO:0009765 ... A0A6J4B024 33033236
    33 6ly5:C (2.38) BS04 CLA ? GO:0009765 ... A0A6J4B024 33033236
    34 6ly5:C (2.38) BS05 CLA ? GO:0009765 ... A0A6J4B024 33033236
    35 6ly5:C (2.38) BS06 CLA ? GO:0009765 ... A0A6J4B024 33033236
    36 6ly5:C (2.38) BS07 CLA ? GO:0009765 ... A0A6J4B024 33033236
    37 6ly5:C (2.38) BS08 CLA ? GO:0009765 ... A0A6J4B024 33033236
    38 6ly5:C (2.38) BS09 CLA ? GO:0009765 ... A0A6J4B024 33033236
    39 6ly5:C (2.38) BS10 CLA ? GO:0009765 ... A0A6J4B024 33033236
    40 6ly5:C (2.38) BS11 KC1 ? GO:0009765 ... A0A6J4B024 33033236
    41 6ly5:C (2.38) BS12 CLA ? GO:0009765 ... A0A6J4B024 33033236
    42 6ly5:C (2.38) BS13 CLA ? GO:0009765 ... A0A6J4B024 33033236
    43 6ly5:D (2.38) BS01 CLA ? GO:0009765 ... A0A6J4B112 33033236
    44 6ly5:D (2.38) BS02 A86 ? GO:0009765 ... A0A6J4B112 33033236
    45 6ly5:D (2.38) BS03 DD6 ? GO:0009765 ... A0A6J4B112 33033236
    46 6ly5:D (2.38) BS04 DD6 ? GO:0009765 ... A0A6J4B112 33033236
    47 6ly5:D (2.38) BS05 DD6 ? GO:0009765 ... A0A6J4B112 33033236
    48 6ly5:D (2.38) BS06 CLA ? GO:0009765 ... A0A6J4B112 33033236
    49 6ly5:D (2.38) BS07 CLA ? GO:0009765 ... A0A6J4B112 33033236
    50 6ly5:D (2.38) BS08 CLA ? GO:0009765 ... A0A6J4B112 33033236
    51 6ly5:D (2.38) BS09 CLA ? GO:0009765 ... A0A6J4B112 33033236
    52 6ly5:D (2.38) BS10 CLA ? GO:0009765 ... A0A6J4B112 33033236
    53 6ly5:D (2.38) BS11 CLA ? GO:0009765 ... A0A6J4B112 33033236
    54 6ly5:D (2.38) BS12 CLA ? GO:0009765 ... A0A6J4B112 33033236
    55 6ly5:D (2.38) BS13 CLA ? GO:0009765 ... A0A6J4B112 33033236
    56 6ly5:D (2.38) BS14 KC1 ? GO:0009765 ... A0A6J4B112 33033236
    57 6ly5:D (2.38) BS15 CLA ? GO:0009765 ... A0A6J4B112 33033236
    58 6ly5:D (2.38) BS16 CLA ? GO:0009765 ... A0A6J4B112 33033236
    59 6ly5:D (2.38) BS17 CLA ? GO:0009765 ... A0A6J4B112 33033236
    60 6ly5:D (2.38) BS18 DD6 ? GO:0009765 ... A0A6J4B112 33033236
    61 6ly5:D (2.38) BS19 CLA ? GO:0009765 ... A0A6J4B112 33033236
    62 6ly5:E (2.38) BS01 DD6 ? GO:0009765 ... A0A6J4B3M5 33033236
    63 6ly5:E (2.38) BS02 A86 ? GO:0009765 ... A0A6J4B3M5 33033236
    64 6ly5:E (2.38) BS03 DD6 ? GO:0009765 ... A0A6J4B3M5 33033236
    65 6ly5:E (2.38) BS04 DD6 ? GO:0009765 ... A0A6J4B3M5 33033236
    66 6ly5:E (2.38) BS05 A86 ? GO:0009765 ... A0A6J4B3M5 33033236
    67 6ly5:E (2.38) BS06 DD6 ? GO:0009765 ... A0A6J4B3M5 33033236
    68 6ly5:E (2.38) BS07 CLA ? GO:0009765 ... A0A6J4B3M5 33033236
    69 6ly5:E (2.38) BS08 KC1 ? GO:0009765 ... A0A6J4B3M5 33033236
    70 6ly5:E (2.38) BS09 CLA ? GO:0009765 ... A0A6J4B3M5 33033236
    71 6ly5:E (2.38) BS10 CLA ? GO:0009765 ... A0A6J4B3M5 33033236
    72 6ly5:E (2.38) BS11 CLA ? GO:0009765 ... A0A6J4B3M5 33033236
    73 6ly5:E (2.38) BS12 CLA ? GO:0009765 ... A0A6J4B3M5 33033236
    74 6ly5:E (2.38) BS13 CLA ? GO:0009765 ... A0A6J4B3M5 33033236
    75 6ly5:E (2.38) BS14 CLA ? GO:0009765 ... A0A6J4B3M5 33033236
    76 6ly5:E (2.38) BS15 CLA ? GO:0009765 ... A0A6J4B3M5 33033236
    77 6ly5:E (2.38) BS16 CLA ? GO:0009765 ... A0A6J4B3M5 33033236
    78 6ly5:E (2.38) BS17 CLA ? GO:0009765 ... A0A6J4B3M5 33033236
    79 6ly5:F (2.38) BS01 A86 ? GO:0009765 ... A0A6J4B492 33033236
    80 6ly5:F (2.38) BS02 A86 ? GO:0009765 ... A0A6J4B492 33033236
    81 6ly5:F (2.38) BS03 DD6 ? GO:0009765 ... A0A6J4B492 33033236
    82 6ly5:F (2.38) BS04 A86 ? GO:0009765 ... A0A6J4B492 33033236
    83 6ly5:F (2.38) BS05 A86 ? GO:0009765 ... A0A6J4B492 33033236
    84 6ly5:F (2.38) BS06 A86 ? GO:0009765 ... A0A6J4B492 33033236
    85 6ly5:F (2.38) BS07 A86 ? GO:0009765 ... A0A6J4B492 33033236
    86 6ly5:F (2.38) BS08 KC1 ? GO:0009765 ... A0A6J4B492 33033236
    87 6ly5:F (2.38) BS09 CLA ? GO:0009765 ... A0A6J4B492 33033236
    88 6ly5:F (2.38) BS10 CLA ? GO:0009765 ... A0A6J4B492 33033236
    89 6ly5:F (2.38) BS11 CLA ? GO:0009765 ... A0A6J4B492 33033236
    90 6ly5:F (2.38) BS12 CLA ? GO:0009765 ... A0A6J4B492 33033236
    91 6ly5:F (2.38) BS13 CLA ? GO:0009765 ... A0A6J4B492 33033236
    92 6ly5:F (2.38) BS14 CLA ? GO:0009765 ... A0A6J4B492 33033236
    93 6ly5:F (2.38) BS15 KC1 ? GO:0009765 ... A0A6J4B492 33033236
    94 6ly5:F (2.38) BS16 CLA ? GO:0009765 ... A0A6J4B492 33033236
    95 6ly5:F (2.38) BS17 CLA ? GO:0009765 ... A0A6J4B492 33033236
    96 6ly5:F (2.38) BS18 A86 ? GO:0009765 ... A0A6J4B492 33033236
    97 6ly5:F (2.38) BS19 CLA ? GO:0009765 ... A0A6J4B492 33033236
    98 6ly5:F (2.38) BS20 CLA ? GO:0009765 ... A0A6J4B492 33033236
    99 6ly5:F (2.38) BS21 CLA ? GO:0009765 ... A0A6J4B492 33033236
    100 6ly5:F (2.38) BS22 A86 ? GO:0009765 ... A0A6J4B492 33033236
    101 6ly5:F (2.38) BS23 CLA ? GO:0009765 ... A0A6J4B492 33033236
    102 6ly5:G (2.38) BS01 CLA ? GO:0009765 ... A0A6J4B0A4 33033236
    103 6ly5:G (2.38) BS02 A86 ? GO:0009765 ... A0A6J4B0A4 33033236
    104 6ly5:G (2.38) BS03 DD6 ? GO:0009765 ... A0A6J4B0A4 33033236
    105 6ly5:G (2.38) BS04 A86 ? GO:0009765 ... A0A6J4B0A4 33033236
    106 6ly5:G (2.38) BS05 A86 ? GO:0009765 ... A0A6J4B0A4 33033236
    107 6ly5:G (2.38) BS06 A86 ? GO:0009765 ... A0A6J4B0A4 33033236
    108 6ly5:G (2.38) BS07 CLA ? GO:0009765 ... A0A6J4B0A4 33033236
    109 6ly5:G (2.38) BS08 KC1 ? GO:0009765 ... A0A6J4B0A4 33033236
    110 6ly5:G (2.38) BS09 CLA ? GO:0009765 ... A0A6J4B0A4 33033236
    111 6ly5:G (2.38) BS10 CLA ? GO:0009765 ... A0A6J4B0A4 33033236
    112 6ly5:G (2.38) BS11 CLA ? GO:0009765 ... A0A6J4B0A4 33033236
    113 6ly5:G (2.38) BS12 CLA ? GO:0009765 ... A0A6J4B0A4 33033236
    114 6ly5:G (2.38) BS13 CLA ? GO:0009765 ... A0A6J4B0A4 33033236
    115 6ly5:G (2.38) BS14 CLA ? GO:0009765 ... A0A6J4B0A4 33033236
    116 6ly5:G (2.38) BS15 CLA ? GO:0009765 ... A0A6J4B0A4 33033236
    117 6ly5:G (2.38) BS16 CLA ? GO:0009765 ... A0A6J4B0A4 33033236
    118 6ly5:G (2.38) BS17 KC1 ? GO:0009765 ... A0A6J4B0A4 33033236
    119 6ly5:G (2.38) BS18 KC1 ? GO:0009765 ... A0A6J4B0A4 33033236
    120 6ly5:G (2.38) BS19 CLA ? GO:0009765 ... A0A6J4B0A4 33033236
    121 6ly5:G (2.38) BS20 A86 ? GO:0009765 ... A0A6J4B0A4 33033236
    122 6ly5:G (2.38) BS21 CLA ? GO:0009765 ... A0A6J4B0A4 33033236
    123 6ly5:G (2.38) BS22 CLA ? GO:0009765 ... A0A6J4B0A4 33033236
    124 6ly5:H (2.38) BS01 CLA ? GO:0009765 ... B8C0K4 33033236
    125 6ly5:H (2.38) BS02 A86 ? GO:0009765 ... B8C0K4 33033236
    126 6ly5:H (2.38) BS03 DD6 ? GO:0009765 ... B8C0K4 33033236
    127 6ly5:H (2.38) BS04 DD6 ? GO:0009765 ... B8C0K4 33033236
    128 6ly5:H (2.38) BS05 A86 ? GO:0009765 ... B8C0K4 33033236
    129 6ly5:H (2.38) BS06 CLA ? GO:0009765 ... B8C0K4 33033236
    130 6ly5:H (2.38) BS07 CLA ? GO:0009765 ... B8C0K4 33033236
    131 6ly5:H (2.38) BS08 CLA ? GO:0009765 ... B8C0K4 33033236
    132 6ly5:H (2.38) BS09 CLA ? GO:0009765 ... B8C0K4 33033236
    133 6ly5:H (2.38) BS10 CLA ? GO:0009765 ... B8C0K4 33033236
    134 6ly5:H (2.38) BS11 CLA ? GO:0009765 ... B8C0K4 33033236
    135 6ly5:H (2.38) BS12 CLA ? GO:0009765 ... B8C0K4 33033236
    136 6ly5:H (2.38) BS13 CLA ? GO:0009765 ... B8C0K4 33033236
    137 6ly5:H (2.38) BS14 KC1 ? GO:0009765 ... B8C0K4 33033236
    138 6ly5:H (2.38) BS15 CLA ? GO:0009765 ... B8C0K4 33033236
    139 6ly5:H (2.38) BS16 CLA ? GO:0009765 ... B8C0K4 33033236
    140 6ly5:H (2.38) BS17 CLA ? GO:0009765 ... B8C0K4 33033236
    141 6ly5:H (2.38) BS18 CLA ? GO:0009765 ... B8C0K4 33033236
    142 6ly5:H (2.38) BS19 A86 ? GO:0009765 ... B8C0K4 33033236
    143 6ly5:I (2.38) BS01 A86 ? GO:0009765 ... A0A6J4B150 33033236
    144 6ly5:I (2.38) BS02 DD6 ? GO:0009765 ... A0A6J4B150 33033236
    145 6ly5:I (2.38) BS03 A86 ? GO:0009765 ... A0A6J4B150 33033236
    146 6ly5:I (2.38) BS04 CLA ? GO:0009765 ... A0A6J4B150 33033236
    147 6ly5:I (2.38) BS05 CLA ? GO:0009765 ... A0A6J4B150 33033236
    148 6ly5:I (2.38) BS06 CLA ? GO:0009765 ... A0A6J4B150 33033236
    149 6ly5:I (2.38) BS07 CLA ? GO:0009765 ... A0A6J4B150 33033236
    150 6ly5:I (2.38) BS08 CLA ? GO:0009765 ... A0A6J4B150 33033236
    151 6ly5:I (2.38) BS09 CLA ? GO:0009765 ... A0A6J4B150 33033236
    152 6ly5:I (2.38) BS10 CLA ? GO:0009765 ... A0A6J4B150 33033236
    153 6ly5:I (2.38) BS11 CLA ? GO:0009765 ... A0A6J4B150 33033236
    154 6ly5:I (2.38) BS12 CLA ? GO:0009765 ... A0A6J4B150 33033236
    155 6ly5:I (2.38) BS13 CLA ? GO:0009765 ... A0A6J4B150 33033236
    156 6ly5:J (2.38) BS01 A86 ? GO:0009765 ... A0A6J4B2D5 33033236
    157 6ly5:J (2.38) BS02 A86 ? GO:0009765 ... A0A6J4B2D5 33033236
    158 6ly5:J (2.38) BS03 A86 ? GO:0009765 ... A0A6J4B2D5 33033236
    159 6ly5:J (2.38) BS04 DD6 ? GO:0009765 ... A0A6J4B2D5 33033236
    160 6ly5:J (2.38) BS05 A86 ? GO:0009765 ... A0A6J4B2D5 33033236
    161 6ly5:J (2.38) BS06 A86 ? GO:0009765 ... A0A6J4B2D5 33033236
    162 6ly5:J (2.38) BS07 CLA ? GO:0009765 ... A0A6J4B2D5 33033236
    163 6ly5:J (2.38) BS08 CLA ? GO:0009765 ... A0A6J4B2D5 33033236
    164 6ly5:J (2.38) BS09 CLA ? GO:0009765 ... A0A6J4B2D5 33033236
    165 6ly5:J (2.38) BS10 CLA ? GO:0009765 ... A0A6J4B2D5 33033236
    166 6ly5:J (2.38) BS11 CLA ? GO:0009765 ... A0A6J4B2D5 33033236
    167 6ly5:J (2.38) BS12 CLA ? GO:0009765 ... A0A6J4B2D5 33033236
    168 6ly5:J (2.38) BS13 CLA ? GO:0009765 ... A0A6J4B2D5 33033236
    169 6ly5:J (2.38) BS14 KC1 ? GO:0009765 ... A0A6J4B2D5 33033236
    170 6ly5:J (2.38) BS15 CLA ? GO:0009765 ... A0A6J4B2D5 33033236
    171 6ly5:J (2.38) BS16 CLA ? GO:0009765 ... A0A6J4B2D5 33033236
    172 6ly5:J (2.38) BS17 CLA ? GO:0009765 ... A0A6J4B2D5 33033236
    173 6ly5:K (2.38) BS01 KC1 ? GO:0009765 ... A0A6J4B0S3 33033236
    174 6ly5:K (2.38) BS02 KC1 ? GO:0009765 ... A0A6J4B0S3 33033236
    175 6ly5:K (2.38) BS03 A86 ? GO:0009765 ... A0A6J4B0S3 33033236
    176 6ly5:K (2.38) BS04 A86 ? GO:0009765 ... A0A6J4B0S3 33033236
    177 6ly5:K (2.38) BS05 A86 ? GO:0009765 ... A0A6J4B0S3 33033236
    178 6ly5:K (2.38) BS06 DD6 ? GO:0009765 ... A0A6J4B0S3 33033236
    179 6ly5:K (2.38) BS07 DD6 ? GO:0009765 ... A0A6J4B0S3 33033236
    180 6ly5:K (2.38) BS08 A86 ? GO:0009765 ... A0A6J4B0S3 33033236
    181 6ly5:K (2.38) BS09 CLA ? GO:0009765 ... A0A6J4B0S3 33033236
    182 6ly5:K (2.38) BS10 CLA ? GO:0009765 ... A0A6J4B0S3 33033236
    183 6ly5:K (2.38) BS11 CLA ? GO:0009765 ... A0A6J4B0S3 33033236
    184 6ly5:K (2.38) BS12 CLA ? GO:0009765 ... A0A6J4B0S3 33033236
    185 6ly5:K (2.38) BS13 CLA ? GO:0009765 ... A0A6J4B0S3 33033236
    186 6ly5:K (2.38) BS14 CLA ? GO:0009765 ... A0A6J4B0S3 33033236
    187 6ly5:K (2.38) BS15 CLA ? GO:0009765 ... A0A6J4B0S3 33033236
    188 6ly5:K (2.38) BS16 KC1 ? GO:0009765 ... A0A6J4B0S3 33033236
    189 6ly5:K (2.38) BS17 CLA ? GO:0009765 ... A0A6J4B0S3 33033236
    190 6ly5:K (2.38) BS18 CLA ? GO:0009765 ... A0A6J4B0S3 33033236
    191 6ly5:L (2.38) BS01 A86 ? GO:0009765 ... A0A6J4B037 33033236
    192 6ly5:L (2.38) BS02 DD6 ? GO:0009765 ... A0A6J4B037 33033236
    193 6ly5:L (2.38) BS03 A86 ? GO:0009765 ... A0A6J4B037 33033236
    194 6ly5:L (2.38) BS04 CLA ? GO:0009765 ... A0A6J4B037 33033236
    195 6ly5:L (2.38) BS05 CLA ? GO:0009765 ... A0A6J4B037 33033236
    196 6ly5:L (2.38) BS06 CLA ? GO:0009765 ... A0A6J4B037 33033236
    197 6ly5:L (2.38) BS07 CLA ? GO:0009765 ... A0A6J4B037 33033236
    198 6ly5:L (2.38) BS08 CLA ? GO:0009765 ... A0A6J4B037 33033236
    199 6ly5:L (2.38) BS09 CLA ? GO:0009765 ... A0A6J4B037 33033236
    200 6ly5:L (2.38) BS10 CLA ? GO:0009765 ... A0A6J4B037 33033236
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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