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BioLiP
Download all results in tab-seperated text for 94 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6lqu:3C (3.7) BS01 rna 2.1.1.- GO:0000451 ... P15646 32943522
    2 6lqu:3D (3.7) BS01 rna ? GO:0000154 ... Q12460 32943522
    3 6lqu:3D (3.7) BS02 rna ? GO:0000154 ... Q12460 32943522
    4 6lqu:3E (3.7) BS01 rna ? GO:0000447 ... Q12499 32943522
    5 6lqu:3E (3.7) BS02 rna ? GO:0000447 ... Q12499 32943522
    6 6lqu:3F (3.7) BS01 rna ? GO:0000447 ... Q06506 32943522
    7 6lqu:3G (3.7) BS01 rna ? GO:0000245 ... P39990 32943522
    8 6lqu:3H (3.7) BS01 rna ? GO:0000245 ... P39990 32943522
    9 6lqu:5B (3.7) BS01 rna ? GO:0000447 ... Q08492 32943522
    10 6lqu:5C (3.7) BS01 rna ? GO:0000447 ... P40055 32943522
    11 6lqu:5C (3.7) BS02 rna ? GO:0000447 ... P40055 32943522
    12 6lqu:5C (3.7) BS03 rna ? GO:0000447 ... P40055 32943522
    13 6lqu:5D (3.7) BS01 rna ? GO:0000447 ... P34247 32943522
    14 6lqu:5D (3.7) BS02 rna ? GO:0000447 ... P34247 32943522
    15 6lqu:5D (3.7) BS03 rna ? GO:0000447 ... P34247 32943522
    16 6lqu:5E (3.7) BS01 rna ? GO:0000447 ... P47083 32943522
    17 6lqu:5F (3.7) BS01 rna ? GO:0003723 ... P32899 32943522
    18 6lqu:5F (3.7) BS02 rna ? GO:0003723 ... P32899 32943522
    19 6lqu:5G (3.7) BS01 rna ? GO:0005515 ... P53941 32943522
    20 6lqu:5G (3.7) BS02 rna ? GO:0005515 ... P53941 32943522
    21 6lqu:5H (3.7) BS01 rna ? GO:0000447 ... Q12136 32943522
    22 6lqu:5I (3.7) BS01 rna ? GO:0000462 ... P33750 32943522
    23 6lqu:5I (3.7) BS02 rna ? GO:0000462 ... P33750 32943522
    24 6lqu:5I (3.7) BS03 rna ? GO:0000462 ... P33750 32943522
    25 6lqu:5J (3.7) BS01 rna ? GO:0000447 ... Q12035 32943522
    26 6lqu:5J (3.7) BS02 rna ? GO:0000447 ... Q12035 32943522
    27 6lqu:5K (3.7) BS01 rna ? GO:0000447 ... Q05498 32943522
    28 6lqu:5K (3.7) BS02 rna ? GO:0000447 ... Q05498 32943522
    29 6lqu:5K (3.7) BS03 rna ? GO:0000447 ... Q05498 32943522
    30 6lqu:5K (3.7) BS04 ZN ? GO:0000447 ... Q05498 32943522
    31 6lqu:A4 (3.7) BS01 rna ? GO:0000462 ... Q06679 32943522
    32 6lqu:A5 (3.7) BS01 rna ? GO:0000462 ... Q04177 32943522
    33 6lqu:A9 (3.7) BS01 rna ? GO:0000049 ... P38882 32943522
    34 6lqu:AE (3.7) BS01 rna ? GO:0000447 ... P42945 32943522
    35 6lqu:AE (3.7) BS02 rna ? GO:0000447 ... P42945 32943522
    36 6lqu:AF (3.7) BS01 rna ? GO:0000462 ... Q04305 32943522
    37 6lqu:AF (3.7) BS02 rna ? GO:0000462 ... Q04305 32943522
    38 6lqu:AG (3.7) BS01 rna ? GO:0000462 ... Q02931 32943522
    39 6lqu:AG (3.7) BS02 rna ? GO:0000462 ... Q02931 32943522
    40 6lqu:B1 (3.7) BS01 rna ? GO:0000028 ... P25635 32943522
    41 6lqu:B1 (3.7) BS02 rna ? GO:0000028 ... P25635 32943522
    42 6lqu:B1 (3.7) BS03 rna ? GO:0000028 ... P25635 32943522
    43 6lqu:B2 (3.7) BS01 rna ? GO:0000447 ... Q12220 32943522
    44 6lqu:B3 (3.7) BS01 rna ? GO:0000447 ... Q05946 32943522
    45 6lqu:B6 (3.7) BS01 rna ? GO:0000447 ... Q02354 32943522
    46 6lqu:B8 (3.7) BS01 rna ? GO:0000292 ... P40362 32943522
    47 6lqu:B8 (3.7) BS02 rna ? GO:0000292 ... P40362 32943522
    48 6lqu:BE (3.7) BS01 rna ? GO:0003674 ... Q06078 32943522
    49 6lqu:BE (3.7) BS02 rna ? GO:0003674 ... Q06078 32943522
    50 6lqu:RA (3.7) BS01 rna ? GO:0000462 ... P48234 32943522
    51 6lqu:RB (3.7) BS01 rna ? GO:0000447 ... P40079 32943522
    52 6lqu:RC (3.7) BS01 rna ? GO:0000447 ... P25586 32943522
    53 6lqu:RD (3.7) BS01 rna ? GO:0000447 ... Q05022 32943522
    54 6lqu:RE (3.7) BS01 rna ? GO:0000028 ... P53254 32943522
    55 6lqu:RG (3.7) BS01 rna 2.1.1.260 GO:0000447 ... Q06287 32943522
    56 6lqu:RH (3.7) BS01 rna 2.1.1.260 GO:0000447 ... Q06287 32943522
    57 6lqu:RI (3.7) BS01 rna ? GO:0000462 ... P36144 32943522
    58 6lqu:RI (3.7) BS02 rna ? GO:0000462 ... P36144 32943522
    59 6lqu:RJ (3.7) BS01 rna ? GO:0000462 ... Q08965 32943522
    60 6lqu:RJ (3.7) BS02 rna ? GO:0000462 ... Q08965 32943522
    61 6lqu:RJ (3.7) BS03 rna ? GO:0000462 ... Q08965 32943522
    62 6lqu:RJ (3.7) BS04 GTP ? GO:0000462 ... Q08965 32943522
    63 6lqu:RJ (3.7) BS05 MG ? GO:0000462 ... Q08965 32943522
    64 6lqu:RK (3.7) BS01 rna ? GO:0000447 ... Q08096 32943522
    65 6lqu:RL (3.7) BS01 rna 2.3.1.- GO:0000049 ... P53914 32943522
    66 6lqu:RN (3.7) BS01 rna ? GO:0000028 ... Q99207 32943522
    67 6lqu:RN (3.7) BS02 rna ? GO:0000028 ... Q99207 32943522
    68 6lqu:RO (3.7) BS01 rna ? GO:0000028 ... Q06512 32943522
    69 6lqu:RP (3.7) BS01 rna ? GO:0000447 ... P35194 32943522
    70 6lqu:RP (3.7) BS02 rna ? GO:0000447 ... P35194 32943522
    71 6lqu:RQ (3.7) BS01 rna ? GO:0000447 ... Q04500 32943522
    72 6lqu:RQ (3.7) BS02 rna ? GO:0000447 ... Q04500 32943522
    73 6lqu:RS (3.7) BS01 rna ? GO:0000447 ... P38333 32943522
    74 6lqu:RT (3.7) BS01 rna N/A GO:0003723 ... N/A 32943522
    75 6lqu:RV (3.7) BS01 rna ? GO:0000462 ... P40546 32943522
    76 6lqu:RV (3.7) BS02 rna ? GO:0000462 ... P40546 32943522
    77 6lqu:RV (3.7) BS03 rna ? GO:0000462 ... P40546 32943522
    78 6lqu:RW (3.7) BS01 rna ? GO:0003674 ... P40470 32943522
    79 6lqu:RY (3.7) BS01 rna ? GO:0000462 ... Q06631 32943522
    80 6lqu:SF (3.7) BS01 rna ? GO:0002181 ... P0CX35 32943522
    81 6lqu:SG (3.7) BS01 rna ? GO:0000028 ... P26783 32943522
    82 6lqu:SH (3.7) BS01 rna ? GO:0000462 ... P0CX37 32943522
    83 6lqu:SJ (3.7) BS01 rna ? GO:0000462 ... P0CX39 32943522
    84 6lqu:SK (3.7) BS01 rna ? GO:0000462 ... O13516 32943522
    85 6lqu:SM (3.7) BS01 rna ? GO:0000028 ... P0CX47 32943522
    86 6lqu:SN (3.7) BS01 rna ? GO:0000028 ... P48589 32943522
    87 6lqu:SO (3.7) BS01 rna ? GO:0000462 ... P05756 32943522
    88 6lqu:SP (3.7) BS01 rna ? GO:0000028 ... P06367 32943522
    89 6lqu:SR (3.7) BS01 rna ? GO:0000462 ... P0CX51 32943522
    90 6lqu:SR (3.7) BS02 rna ? GO:0000462 ... P0CX51 32943522
    91 6lqu:ST (3.7) BS01 rna ? GO:0000054 ... P0CX55 32943522
    92 6lqu:SY (3.7) BS01 rna ? GO:0000462 ... P0CX29 32943522
    93 6lqu:SZ (3.7) BS01 rna ? GO:0000462 ... P0CX31 32943522
    94 6lqu:Sd (3.7) BS01 rna ? GO:0000028 ... Q3E7X9 32943522
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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