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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 2302 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6kgx:11 (2.8) BS01 PEB ? GO:0009507 ... P11393 32076272
    2 6kgx:11 (2.8) BS02 PEB ? GO:0009507 ... P11393 32076272
    3 6kgx:11 (2.8) BS03 PEB ? GO:0009507 ... P11393 32076272
    4 6kgx:11 (2.8) BS04 PEB ? GO:0009507 ... P11393 32076272
    5 6kgx:14 (2.8) BS01 PEB ? GO:0009507 ... P11393 32076272
    6 6kgx:14 (2.8) BS02 PEB ? GO:0009507 ... P11393 32076272
    7 6kgx:14 (2.8) BS03 PEB ? GO:0009507 ... P11393 32076272
    8 6kgx:14 (2.8) BS04 PEB ? GO:0009507 ... P11393 32076272
    9 6kgx:21 (2.8) BS01 PEB N/A N/A N/A 32076272
    10 6kgx:21 (2.8) BS02 PEB N/A N/A N/A 32076272
    11 6kgx:21 (2.8) BS03 PEB N/A N/A N/A 32076272
    12 6kgx:21 (2.8) BS04 PEB N/A N/A N/A 32076272
    13 6kgx:21 (2.8) BS05 PEB N/A N/A N/A 32076272
    14 6kgx:21 (2.8) BS06 PEB N/A N/A N/A 32076272
    15 6kgx:21 (2.8) BS07 PUB N/A N/A N/A 32076272
    16 6kgx:21 (2.8) BS08 PUB N/A N/A N/A 32076272
    17 6kgx:21 (2.8) BS09 PEB N/A N/A N/A 32076272
    18 6kgx:21 (2.8) BS10 PEB N/A N/A N/A 32076272
    19 6kgx:21 (2.8) BS11 PEB N/A N/A N/A 32076272
    20 6kgx:24 (2.8) BS01 PEB N/A N/A N/A 32076272
    21 6kgx:24 (2.8) BS02 PEB N/A N/A N/A 32076272
    22 6kgx:24 (2.8) BS03 PEB N/A N/A N/A 32076272
    23 6kgx:24 (2.8) BS04 PEB N/A N/A N/A 32076272
    24 6kgx:24 (2.8) BS05 PEB N/A N/A N/A 32076272
    25 6kgx:24 (2.8) BS06 PUB N/A N/A N/A 32076272
    26 6kgx:24 (2.8) BS07 PUB N/A N/A N/A 32076272
    27 6kgx:24 (2.8) BS08 PEB N/A N/A N/A 32076272
    28 6kgx:24 (2.8) BS09 PEB N/A N/A N/A 32076272
    29 6kgx:24 (2.8) BS10 PEB N/A N/A N/A 32076272
    30 6kgx:2H (2.8) BS01 PEB N/A N/A N/A 32076272
    31 6kgx:31 (2.8) BS01 PEB N/A N/A N/A 32076272
    32 6kgx:31 (2.8) BS02 PEB N/A N/A N/A 32076272
    33 6kgx:34 (2.8) BS01 PEB N/A N/A N/A 32076272
    34 6kgx:34 (2.8) BS02 PEB N/A N/A N/A 32076272
    35 6kgx:34 (2.8) BS03 PEB N/A N/A N/A 32076272
    36 6kgx:4H (2.8) BS01 PEB N/A N/A N/A 32076272
    37 6kgx:A1 (2.8) BS01 PEB ? GO:0009507 ... E2IH77 32076272
    38 6kgx:A1 (2.8) BS02 PEB ? GO:0009507 ... E2IH77 32076272
    39 6kgx:A1 (2.8) BS03 PEB ? GO:0009507 ... E2IH77 32076272
    40 6kgx:A2 (2.8) BS01 PEB N/A N/A N/A 32076272
    41 6kgx:A2 (2.8) BS02 PUB N/A N/A N/A 32076272
    42 6kgx:A2 (2.8) BS03 PUB N/A N/A N/A 32076272
    43 6kgx:A2 (2.8) BS04 PEB N/A N/A N/A 32076272
    44 6kgx:A2 (2.8) BS05 PEB N/A N/A N/A 32076272
    45 6kgx:A2 (2.8) BS06 PEB N/A N/A N/A 32076272
    46 6kgx:A2 (2.8) BS07 PEB N/A N/A N/A 32076272
    47 6kgx:A2 (2.8) BS08 PEB N/A N/A N/A 32076272
    48 6kgx:A2 (2.8) BS09 PEB N/A N/A N/A 32076272
    49 6kgx:A2 (2.8) BS10 PEB N/A N/A N/A 32076272
    50 6kgx:A2 (2.8) BS11 PEB N/A N/A N/A 32076272
    51 6kgx:A2 (2.8) BS12 PEB N/A N/A N/A 32076272
    52 6kgx:A2 (2.8) BS13 PEB N/A N/A N/A 32076272
    53 6kgx:A3 (2.8) BS01 PEB ? GO:0009507 ... E2IH77 32076272
    54 6kgx:A3 (2.8) BS02 PEB ? GO:0009507 ... E2IH77 32076272
    55 6kgx:A3 (2.8) BS03 PEB ? GO:0009507 ... E2IH77 32076272
    56 6kgx:A3 (2.8) BS04 PEB ? GO:0009507 ... E2IH77 32076272
    57 6kgx:A4 (2.8) BS01 PEB ? GO:0009507 ... E2IH77 32076272
    58 6kgx:A4 (2.8) BS02 PEB ? GO:0009507 ... E2IH77 32076272
    59 6kgx:A5 (2.8) BS01 PEB ? GO:0009507 ... P11393 32076272
    60 6kgx:A5 (2.8) BS02 PEB ? GO:0009507 ... P11393 32076272
    61 6kgx:A5 (2.8) BS03 PEB ? GO:0009507 ... P11393 32076272
    62 6kgx:A5 (2.8) BS04 PEB ? GO:0009507 ... P11393 32076272
    63 6kgx:A6 (2.8) BS01 PEB N/A N/A N/A 32076272
    64 6kgx:A6 (2.8) BS02 PUB N/A N/A N/A 32076272
    65 6kgx:A6 (2.8) BS03 PUB N/A N/A N/A 32076272
    66 6kgx:A6 (2.8) BS04 PEB N/A N/A N/A 32076272
    67 6kgx:A6 (2.8) BS05 PEB N/A N/A N/A 32076272
    68 6kgx:A6 (2.8) BS06 PEB N/A N/A N/A 32076272
    69 6kgx:A6 (2.8) BS07 PEB N/A N/A N/A 32076272
    70 6kgx:A6 (2.8) BS08 PEB N/A N/A N/A 32076272
    71 6kgx:A6 (2.8) BS09 PEB N/A N/A N/A 32076272
    72 6kgx:A6 (2.8) BS10 PEB N/A N/A N/A 32076272
    73 6kgx:A6 (2.8) BS11 PEB N/A N/A N/A 32076272
    74 6kgx:A6 (2.8) BS12 PEB N/A N/A N/A 32076272
    75 6kgx:A6 (2.8) BS13 PEB N/A N/A N/A 32076272
    76 6kgx:A7 (2.8) BS01 PEB N/A N/A N/A 32076272
    77 6kgx:A7 (2.8) BS02 PEB N/A N/A N/A 32076272
    78 6kgx:A7 (2.8) BS03 PUB N/A N/A N/A 32076272
    79 6kgx:A7 (2.8) BS04 PUB N/A N/A N/A 32076272
    80 6kgx:A7 (2.8) BS05 PEB N/A N/A N/A 32076272
    81 6kgx:A7 (2.8) BS06 PEB N/A N/A N/A 32076272
    82 6kgx:A7 (2.8) BS07 PEB N/A N/A N/A 32076272
    83 6kgx:A7 (2.8) BS08 PEB N/A N/A N/A 32076272
    84 6kgx:A7 (2.8) BS09 PEB N/A N/A N/A 32076272
    85 6kgx:A7 (2.8) BS10 PEB N/A N/A N/A 32076272
    86 6kgx:A7 (2.8) BS11 PEB N/A N/A N/A 32076272
    87 6kgx:A8 (2.8) BS01 PEB N/A N/A N/A 32076272
    88 6kgx:A8 (2.8) BS02 PEB N/A N/A N/A 32076272
    89 6kgx:A8 (2.8) BS03 PUB N/A N/A N/A 32076272
    90 6kgx:A8 (2.8) BS04 PUB N/A N/A N/A 32076272
    91 6kgx:A8 (2.8) BS05 PEB N/A N/A N/A 32076272
    92 6kgx:A8 (2.8) BS06 PEB N/A N/A N/A 32076272
    93 6kgx:A8 (2.8) BS07 PEB N/A N/A N/A 32076272
    94 6kgx:A8 (2.8) BS08 PEB N/A N/A N/A 32076272
    95 6kgx:A8 (2.8) BS09 PEB N/A N/A N/A 32076272
    96 6kgx:A8 (2.8) BS10 PEB N/A N/A N/A 32076272
    97 6kgx:A9 (2.8) BS01 PEB N/A N/A N/A 32076272
    98 6kgx:A9 (2.8) BS02 PUB N/A N/A N/A 32076272
    99 6kgx:A9 (2.8) BS03 PEB N/A N/A N/A 32076272
    100 6kgx:A9 (2.8) BS04 PEB N/A N/A N/A 32076272
    101 6kgx:A9 (2.8) BS05 PUB N/A N/A N/A 32076272
    102 6kgx:A9 (2.8) BS06 PEB N/A N/A N/A 32076272
    103 6kgx:A9 (2.8) BS07 PEB N/A N/A N/A 32076272
    104 6kgx:A9 (2.8) BS08 PEB N/A N/A N/A 32076272
    105 6kgx:A9 (2.8) BS09 PEB N/A N/A N/A 32076272
    106 6kgx:A9 (2.8) BS10 PEB N/A N/A N/A 32076272
    107 6kgx:A9 (2.8) BS11 PEB N/A N/A N/A 32076272
    108 6kgx:AA (2.8) BS01 PEB N/A N/A N/A 32076272
    109 6kgx:AA (2.8) BS02 PEB N/A N/A N/A 32076272
    110 6kgx:AA (2.8) BS03 PUB N/A N/A N/A 32076272
    111 6kgx:AA (2.8) BS04 PUB N/A N/A N/A 32076272
    112 6kgx:AA (2.8) BS05 PEB N/A N/A N/A 32076272
    113 6kgx:AA (2.8) BS06 PEB N/A N/A N/A 32076272
    114 6kgx:AA (2.8) BS07 PEB N/A N/A N/A 32076272
    115 6kgx:AA (2.8) BS08 PEB N/A N/A N/A 32076272
    116 6kgx:AA (2.8) BS09 PEB N/A N/A N/A 32076272
    117 6kgx:AA (2.8) BS10 PEB N/A N/A N/A 32076272
    118 6kgx:AB (2.8) BS01 PEB N/A N/A N/A 32076272
    119 6kgx:AB (2.8) BS02 PUB N/A N/A N/A 32076272
    120 6kgx:AB (2.8) BS03 PUB N/A N/A N/A 32076272
    121 6kgx:AB (2.8) BS04 PEB N/A N/A N/A 32076272
    122 6kgx:AB (2.8) BS05 PEB N/A N/A N/A 32076272
    123 6kgx:AB (2.8) BS06 PEB N/A N/A N/A 32076272
    124 6kgx:AB (2.8) BS07 PEB N/A N/A N/A 32076272
    125 6kgx:AB (2.8) BS08 PEB N/A N/A N/A 32076272
    126 6kgx:AB (2.8) BS09 PEB N/A N/A N/A 32076272
    127 6kgx:AB (2.8) BS10 PEB N/A N/A N/A 32076272
    128 6kgx:AB (2.8) BS11 PEB N/A N/A N/A 32076272
    129 6kgx:AB (2.8) BS12 PEB N/A N/A N/A 32076272
    130 6kgx:AB (2.8) BS13 PEB N/A N/A N/A 32076272
    131 6kgx:AC (2.8) BS01 PEB ? GO:0009507 ... P11393 32076272
    132 6kgx:AC (2.8) BS02 PEB ? GO:0009507 ... P11393 32076272
    133 6kgx:AC (2.8) BS03 PEB ? GO:0009507 ... P11393 32076272
    134 6kgx:AC (2.8) BS04 PEB ? GO:0009507 ... P11393 32076272
    135 6kgx:AD (2.8) BS01 PEB ? GO:0009507 ... E2IH77 32076272
    136 6kgx:AD (2.8) BS02 PEB ? GO:0009507 ... E2IH77 32076272
    137 6kgx:AE (2.8) BS01 PEB ? GO:0009507 ... E2IH77 32076272
    138 6kgx:AE (2.8) BS02 PEB ? GO:0009507 ... E2IH77 32076272
    139 6kgx:AE (2.8) BS03 PEB ? GO:0009507 ... E2IH77 32076272
    140 6kgx:AF (2.8) BS01 PEB N/A N/A N/A 32076272
    141 6kgx:AF (2.8) BS02 PEB N/A N/A N/A 32076272
    142 6kgx:AF (2.8) BS03 PUB N/A N/A N/A 32076272
    143 6kgx:AF (2.8) BS04 PUB N/A N/A N/A 32076272
    144 6kgx:AF (2.8) BS05 PEB N/A N/A N/A 32076272
    145 6kgx:AF (2.8) BS06 PEB N/A N/A N/A 32076272
    146 6kgx:AF (2.8) BS07 PEB N/A N/A N/A 32076272
    147 6kgx:AF (2.8) BS08 PEB N/A N/A N/A 32076272
    148 6kgx:AF (2.8) BS09 PEB N/A N/A N/A 32076272
    149 6kgx:AF (2.8) BS10 PEB N/A N/A N/A 32076272
    150 6kgx:AF (2.8) BS11 PEB N/A N/A N/A 32076272
    151 6kgx:AF (2.8) BS12 PEB N/A N/A N/A 32076272
    152 6kgx:AG (2.8) BS01 PEB ? GO:0009507 ... E2IH77 32076272
    153 6kgx:AG (2.8) BS02 PEB ? GO:0009507 ... E2IH77 32076272
    154 6kgx:AI (2.8) BS01 PEB N/A N/A N/A 32076272
    155 6kgx:AI (2.8) BS02 PUB N/A N/A N/A 32076272
    156 6kgx:AI (2.8) BS03 PUB N/A N/A N/A 32076272
    157 6kgx:AI (2.8) BS04 PEB N/A N/A N/A 32076272
    158 6kgx:AI (2.8) BS05 PEB N/A N/A N/A 32076272
    159 6kgx:AI (2.8) BS06 PEB N/A N/A N/A 32076272
    160 6kgx:AI (2.8) BS07 PEB N/A N/A N/A 32076272
    161 6kgx:AI (2.8) BS08 PEB N/A N/A N/A 32076272
    162 6kgx:AI (2.8) BS09 PEB N/A N/A N/A 32076272
    163 6kgx:AI (2.8) BS10 PEB N/A N/A N/A 32076272
    164 6kgx:AI (2.8) BS11 PEB N/A N/A N/A 32076272
    165 6kgx:AI (2.8) BS12 PEB N/A N/A N/A 32076272
    166 6kgx:AJ (2.8) BS01 PEB N/A N/A N/A 32076272
    167 6kgx:AJ (2.8) BS02 PUB N/A N/A N/A 32076272
    168 6kgx:AJ (2.8) BS03 PEB N/A N/A N/A 32076272
    169 6kgx:AJ (2.8) BS04 PEB N/A N/A N/A 32076272
    170 6kgx:AJ (2.8) BS05 PEB N/A N/A N/A 32076272
    171 6kgx:AJ (2.8) BS06 PUB N/A N/A N/A 32076272
    172 6kgx:AJ (2.8) BS07 PEB N/A N/A N/A 32076272
    173 6kgx:AJ (2.8) BS08 PEB N/A N/A N/A 32076272
    174 6kgx:AJ (2.8) BS09 PEB N/A N/A N/A 32076272
    175 6kgx:AJ (2.8) BS10 PEB N/A N/A N/A 32076272
    176 6kgx:AJ (2.8) BS11 PEB N/A N/A N/A 32076272
    177 6kgx:B1 (2.8) BS01 PEB ? GO:0009507 ... P11393 32076272
    178 6kgx:B1 (2.8) BS02 PEB ? GO:0009507 ... P11393 32076272
    179 6kgx:B1 (2.8) BS03 PEB ? GO:0009507 ... P11393 32076272
    180 6kgx:B1 (2.8) BS04 PEB ? GO:0009507 ... P11393 32076272
    181 6kgx:B3 (2.8) BS01 PEB ? GO:0009507 ... P11393 32076272
    182 6kgx:B3 (2.8) BS02 PEB ? GO:0009507 ... P11393 32076272
    183 6kgx:B3 (2.8) BS03 PEB ? GO:0009507 ... P11393 32076272
    184 6kgx:B3 (2.8) BS04 PEB ? GO:0009507 ... P11393 32076272
    185 6kgx:B4 (2.8) BS01 PEB ? GO:0009507 ... P11393 32076272
    186 6kgx:B4 (2.8) BS02 PEB ? GO:0009507 ... P11393 32076272
    187 6kgx:B4 (2.8) BS03 PEB ? GO:0009507 ... P11393 32076272
    188 6kgx:B4 (2.8) BS04 PEB ? GO:0009507 ... P11393 32076272
    189 6kgx:B5 (2.8) BS01 PEB ? GO:0009507 ... P11393 32076272
    190 6kgx:B5 (2.8) BS02 PEB ? GO:0009507 ... P11393 32076272
    191 6kgx:B5 (2.8) BS03 PEB ? GO:0009507 ... P11393 32076272
    192 6kgx:B8 (2.8) BS01 PEB N/A N/A N/A 32076272
    193 6kgx:B8 (2.8) BS02 PUB N/A N/A N/A 32076272
    194 6kgx:B8 (2.8) BS03 PEB N/A N/A N/A 32076272
    195 6kgx:B8 (2.8) BS04 PEB N/A N/A N/A 32076272
    196 6kgx:B8 (2.8) BS05 PEB N/A N/A N/A 32076272
    197 6kgx:B8 (2.8) BS06 PUB N/A N/A N/A 32076272
    198 6kgx:B8 (2.8) BS07 PEB N/A N/A N/A 32076272
    199 6kgx:B8 (2.8) BS08 PEB N/A N/A N/A 32076272
    200 6kgx:B9 (2.8) BS01 PEB ? GO:0009507 ... E2IH77 32076272
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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