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BioLiP
Download all results in tab-seperated text for 97 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6ke6:3C (3.4) BS01 rna 2.1.1.- GO:0000451 ... P15646 N/A
    2 6ke6:3D (3.4) BS01 rna ? GO:0000154 ... Q12460 N/A
    3 6ke6:3D (3.4) BS02 rna ? GO:0000154 ... Q12460 N/A
    4 6ke6:3E (3.4) BS01 rna ? GO:0000447 ... Q12499 N/A
    5 6ke6:3E (3.4) BS02 rna ? GO:0000447 ... Q12499 N/A
    6 6ke6:3F (3.4) BS01 rna ? GO:0000447 ... Q06506 N/A
    7 6ke6:3G (3.4) BS01 rna ? GO:0000245 ... P39990 N/A
    8 6ke6:3H (3.4) BS01 rna ? GO:0000245 ... P39990 N/A
    9 6ke6:5B (3.4) BS01 rna ? GO:0000447 ... Q08492 N/A
    10 6ke6:5C (3.4) BS01 rna ? GO:0000447 ... P40055 N/A
    11 6ke6:5C (3.4) BS02 rna ? GO:0000447 ... P40055 N/A
    12 6ke6:5C (3.4) BS03 rna ? GO:0000447 ... P40055 N/A
    13 6ke6:5D (3.4) BS01 rna ? GO:0000447 ... P34247 N/A
    14 6ke6:5D (3.4) BS02 rna ? GO:0000447 ... P34247 N/A
    15 6ke6:5D (3.4) BS03 rna ? GO:0000447 ... P34247 N/A
    16 6ke6:5E (3.4) BS01 rna ? GO:0000447 ... P47083 N/A
    17 6ke6:5F (3.4) BS01 rna ? GO:0003723 ... P32899 N/A
    18 6ke6:5F (3.4) BS02 rna ? GO:0003723 ... P32899 N/A
    19 6ke6:5G (3.4) BS01 rna ? GO:0005515 ... P53941 N/A
    20 6ke6:5G (3.4) BS02 rna ? GO:0005515 ... P53941 N/A
    21 6ke6:5H (3.4) BS01 rna ? GO:0000447 ... Q12136 N/A
    22 6ke6:5I (3.4) BS01 rna ? GO:0000462 ... P33750 N/A
    23 6ke6:5I (3.4) BS02 rna ? GO:0000462 ... P33750 N/A
    24 6ke6:5I (3.4) BS03 rna ? GO:0000462 ... P33750 N/A
    25 6ke6:5J (3.4) BS01 rna ? GO:0000447 ... Q12035 N/A
    26 6ke6:5J (3.4) BS02 rna ? GO:0000447 ... Q12035 N/A
    27 6ke6:5J (3.4) BS03 rna ? GO:0000447 ... Q12035 N/A
    28 6ke6:5K (3.4) BS01 rna ? GO:0000447 ... Q05498 N/A
    29 6ke6:5K (3.4) BS02 rna ? GO:0000447 ... Q05498 N/A
    30 6ke6:5K (3.4) BS03 rna ? GO:0000447 ... Q05498 N/A
    31 6ke6:5K (3.4) BS04 ZN ? GO:0000447 ... Q05498 N/A
    32 6ke6:A4 (3.4) BS01 rna ? GO:0000462 ... Q06679 N/A
    33 6ke6:A5 (3.4) BS01 rna ? GO:0000462 ... Q04177 N/A
    34 6ke6:A9 (3.4) BS01 rna ? GO:0000049 ... P38882 N/A
    35 6ke6:AE (3.4) BS01 rna ? GO:0000447 ... P42945 N/A
    36 6ke6:AF (3.4) BS01 rna ? GO:0000462 ... Q04305 N/A
    37 6ke6:AF (3.4) BS02 rna ? GO:0000462 ... Q04305 N/A
    38 6ke6:AG (3.4) BS01 rna ? GO:0000462 ... Q02931 N/A
    39 6ke6:AG (3.4) BS02 rna ? GO:0000462 ... Q02931 N/A
    40 6ke6:B1 (3.4) BS01 rna ? GO:0000028 ... P25635 N/A
    41 6ke6:B1 (3.4) BS02 rna ? GO:0000028 ... P25635 N/A
    42 6ke6:B1 (3.4) BS03 rna ? GO:0000028 ... P25635 N/A
    43 6ke6:B2 (3.4) BS01 rna ? GO:0000447 ... Q12220 N/A
    44 6ke6:B3 (3.4) BS01 rna ? GO:0000447 ... Q05946 N/A
    45 6ke6:B6 (3.4) BS01 rna ? GO:0000447 ... Q02354 N/A
    46 6ke6:B8 (3.4) BS01 rna ? GO:0000292 ... P40362 N/A
    47 6ke6:B8 (3.4) BS02 rna ? GO:0000292 ... P40362 N/A
    48 6ke6:BE (3.4) BS01 rna ? GO:0003674 ... Q06078 N/A
    49 6ke6:BE (3.4) BS02 rna ? GO:0003674 ... Q06078 N/A
    50 6ke6:RA (3.4) BS01 rna ? GO:0000462 ... P48234 N/A
    51 6ke6:RB (3.4) BS01 rna ? GO:0000447 ... P40079 N/A
    52 6ke6:RC (3.4) BS01 rna ? GO:0000447 ... P25586 N/A
    53 6ke6:RC (3.4) BS02 rna ? GO:0000447 ... P25586 N/A
    54 6ke6:RE (3.4) BS01 rna ? GO:0000028 ... P53254 N/A
    55 6ke6:RF (3.4) BS01 rna ? GO:0000028 ... P25368 N/A
    56 6ke6:RG (3.4) BS01 rna 2.1.1.260 GO:0000447 ... Q06287 N/A
    57 6ke6:RH (3.4) BS01 rna 2.1.1.260 GO:0000447 ... Q06287 N/A
    58 6ke6:RI (3.4) BS01 rna ? GO:0000462 ... P36144 N/A
    59 6ke6:RI (3.4) BS02 rna ? GO:0000462 ... P36144 N/A
    60 6ke6:RJ (3.4) BS01 rna ? GO:0000462 ... Q08965 N/A
    61 6ke6:RJ (3.4) BS02 rna ? GO:0000462 ... Q08965 N/A
    62 6ke6:RJ (3.4) BS03 rna ? GO:0000462 ... Q08965 N/A
    63 6ke6:RJ (3.4) BS04 GTP ? GO:0000462 ... Q08965 N/A
    64 6ke6:RJ (3.4) BS05 MG ? GO:0000462 ... Q08965 N/A
    65 6ke6:RK (3.4) BS01 rna ? GO:0000447 ... Q08096 N/A
    66 6ke6:RL (3.4) BS01 rna 2.3.1.- GO:0000049 ... P53914 N/A
    67 6ke6:RN (3.4) BS01 rna ? GO:0000028 ... Q99207 N/A
    68 6ke6:RN (3.4) BS02 rna ? GO:0000028 ... Q99207 N/A
    69 6ke6:RO (3.4) BS01 rna ? GO:0000028 ... Q06512 N/A
    70 6ke6:RP (3.4) BS01 rna ? GO:0000447 ... P35194 N/A
    71 6ke6:RQ (3.4) BS01 rna ? GO:0000447 ... Q04500 N/A
    72 6ke6:RQ (3.4) BS02 rna ? GO:0000447 ... Q04500 N/A
    73 6ke6:RS (3.4) BS01 rna ? GO:0000447 ... P38333 N/A
    74 6ke6:RT (3.4) BS01 rna N/A GO:0003723 ... N/A N/A
    75 6ke6:RV (3.4) BS01 rna ? GO:0000462 ... P40546 N/A
    76 6ke6:RV (3.4) BS02 rna ? GO:0000462 ... P40546 N/A
    77 6ke6:RV (3.4) BS03 rna ? GO:0000462 ... P40546 N/A
    78 6ke6:SC (3.4) BS01 rna ? GO:0000462 ... P33442 N/A
    79 6ke6:SF (3.4) BS01 rna ? GO:0002181 ... P0CX35 N/A
    80 6ke6:SG (3.4) BS01 rna ? GO:0000028 ... P26783 N/A
    81 6ke6:SH (3.4) BS01 rna ? GO:0000462 ... P0CX37 N/A
    82 6ke6:SI (3.4) BS01 rna ? GO:0002181 ... P26786 N/A
    83 6ke6:SJ (3.4) BS01 rna ? GO:0000462 ... P0CX39 N/A
    84 6ke6:SK (3.4) BS01 rna ? GO:0000462 ... O13516 N/A
    85 6ke6:SM (3.4) BS01 rna ? GO:0000028 ... P0CX47 N/A
    86 6ke6:SN (3.4) BS01 rna ? GO:0000028 ... P48589 N/A
    87 6ke6:SO (3.4) BS01 rna ? GO:0000462 ... P05756 N/A
    88 6ke6:SP (3.4) BS01 rna ? GO:0000028 ... P06367 N/A
    89 6ke6:SR (3.4) BS01 rna ? GO:0000462 ... P0CX51 N/A
    90 6ke6:SR (3.4) BS02 rna ? GO:0000462 ... P0CX51 N/A
    91 6ke6:ST (3.4) BS01 rna ? GO:0000054 ... P0CX55 N/A
    92 6ke6:SX (3.4) BS01 rna ? GO:0002181 ... Q3E7Y3 N/A
    93 6ke6:SY (3.4) BS01 rna ? GO:0000462 ... P0CX29 N/A
    94 6ke6:SZ (3.4) BS01 rna ? GO:0000462 ... P0CX31 N/A
    95 6ke6:Sc (3.4) BS01 rna ? GO:0000028 ... P35997 N/A
    96 6ke6:Sc (3.4) BS02 ZN ? GO:0000028 ... P35997 N/A
    97 6ke6:Sd (3.4) BS01 rna ? GO:0000028 ... Q3E7X9 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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