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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 438 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6kad:0 (3.4) BS01 CHL ? GO:0009416 ... Q93VE0 31768031
    2 6kad:0 (3.4) BS02 CLA ? GO:0009416 ... Q93VE0 31768031
    3 6kad:0 (3.4) BS03 CLA ? GO:0009416 ... Q93VE0 31768031
    4 6kad:0 (3.4) BS04 CLA ? GO:0009416 ... Q93VE0 31768031
    5 6kad:0 (3.4) BS05 CHL ? GO:0009416 ... Q93VE0 31768031
    6 6kad:0 (3.4) BS06 CHL ? GO:0009416 ... Q93VE0 31768031
    7 6kad:0 (3.4) BS07 CHL ? GO:0009416 ... Q93VE0 31768031
    8 6kad:0 (3.4) BS08 CHL ? GO:0009416 ... Q93VE0 31768031
    9 6kad:0 (3.4) BS09 CHL ? GO:0009416 ... Q93VE0 31768031
    10 6kad:0 (3.4) BS10 CLA ? GO:0009416 ... Q93VE0 31768031
    11 6kad:0 (3.4) BS11 CLA ? GO:0009416 ... Q93VE0 31768031
    12 6kad:0 (3.4) BS12 CLA ? GO:0009416 ... Q93VE0 31768031
    13 6kad:0 (3.4) BS13 CLA ? GO:0009416 ... Q93VE0 31768031
    14 6kad:0 (3.4) BS14 CLA ? GO:0009416 ... Q93VE0 31768031
    15 6kad:0 (3.4) BS15 CHL ? GO:0009416 ... Q93VE0 31768031
    16 6kad:1 (3.4) BS01 CHL ? GO:0009416 ... Q93VE0 31768031
    17 6kad:1 (3.4) BS02 CLA ? GO:0009416 ... Q93VE0 31768031
    18 6kad:1 (3.4) BS03 CLA ? GO:0009416 ... Q93VE0 31768031
    19 6kad:1 (3.4) BS04 CLA ? GO:0009416 ... Q93VE0 31768031
    20 6kad:1 (3.4) BS05 CHL ? GO:0009416 ... Q93VE0 31768031
    21 6kad:1 (3.4) BS06 CHL ? GO:0009416 ... Q93VE0 31768031
    22 6kad:1 (3.4) BS07 CHL ? GO:0009416 ... Q93VE0 31768031
    23 6kad:1 (3.4) BS08 CHL ? GO:0009416 ... Q93VE0 31768031
    24 6kad:1 (3.4) BS09 CHL ? GO:0009416 ... Q93VE0 31768031
    25 6kad:1 (3.4) BS10 CLA ? GO:0009416 ... Q93VE0 31768031
    26 6kad:1 (3.4) BS11 CLA ? GO:0009416 ... Q93VE0 31768031
    27 6kad:1 (3.4) BS12 CLA ? GO:0009416 ... Q93VE0 31768031
    28 6kad:1 (3.4) BS13 CLA ? GO:0009416 ... Q93VE0 31768031
    29 6kad:1 (3.4) BS14 CLA ? GO:0009416 ... Q93VE0 31768031
    30 6kad:1 (3.4) BS15 CHL ? GO:0009416 ... Q93VE0 31768031
    31 6kad:2 (3.4) BS01 CHL ? GO:0009416 ... Q93WL4 31768031
    32 6kad:2 (3.4) BS02 CHL ? GO:0009416 ... Q93WL4 31768031
    33 6kad:2 (3.4) BS03 CLA ? GO:0009416 ... Q93WL4 31768031
    34 6kad:2 (3.4) BS04 CLA ? GO:0009416 ... Q93WL4 31768031
    35 6kad:2 (3.4) BS05 CHL ? GO:0009416 ... Q93WL4 31768031
    36 6kad:2 (3.4) BS06 CHL ? GO:0009416 ... Q93WL4 31768031
    37 6kad:2 (3.4) BS07 CHL ? GO:0009416 ... Q93WL4 31768031
    38 6kad:2 (3.4) BS08 CHL ? GO:0009416 ... Q93WL4 31768031
    39 6kad:2 (3.4) BS09 CHL ? GO:0009416 ... Q93WL4 31768031
    40 6kad:2 (3.4) BS10 CLA ? GO:0009416 ... Q93WL4 31768031
    41 6kad:2 (3.4) BS11 CLA ? GO:0009416 ... Q93WL4 31768031
    42 6kad:2 (3.4) BS12 CLA ? GO:0009416 ... Q93WL4 31768031
    43 6kad:2 (3.4) BS13 CLA ? GO:0009416 ... Q93WL4 31768031
    44 6kad:2 (3.4) BS14 CLA ? GO:0009416 ... Q93WL4 31768031
    45 6kad:3 (3.4) BS01 CHL ? GO:0009416 ... Q93WL4 31768031
    46 6kad:3 (3.4) BS02 CHL ? GO:0009416 ... Q93WL4 31768031
    47 6kad:3 (3.4) BS03 CLA ? GO:0009416 ... Q93WL4 31768031
    48 6kad:3 (3.4) BS04 CLA ? GO:0009416 ... Q93WL4 31768031
    49 6kad:3 (3.4) BS05 CHL ? GO:0009416 ... Q93WL4 31768031
    50 6kad:3 (3.4) BS06 CHL ? GO:0009416 ... Q93WL4 31768031
    51 6kad:3 (3.4) BS07 CHL ? GO:0009416 ... Q93WL4 31768031
    52 6kad:3 (3.4) BS08 CHL ? GO:0009416 ... Q93WL4 31768031
    53 6kad:3 (3.4) BS09 CLA ? GO:0009416 ... Q93WL4 31768031
    54 6kad:3 (3.4) BS10 CLA ? GO:0009416 ... Q93WL4 31768031
    55 6kad:3 (3.4) BS11 CLA ? GO:0009416 ... Q93WL4 31768031
    56 6kad:3 (3.4) BS12 CLA ? GO:0009416 ... Q93WL4 31768031
    57 6kad:3 (3.4) BS13 CLA ? GO:0009416 ... Q93WL4 31768031
    58 6kad:4 (3.4) BS01 CHL ? GO:0009416 ... Q93WE0 31768031
    59 6kad:4 (3.4) BS02 CLA ? GO:0009416 ... Q93WE0 31768031
    60 6kad:4 (3.4) BS03 CLA ? GO:0009416 ... Q93WE0 31768031
    61 6kad:4 (3.4) BS04 CLA ? GO:0009416 ... Q93WE0 31768031
    62 6kad:4 (3.4) BS05 CHL ? GO:0009416 ... Q93WE0 31768031
    63 6kad:4 (3.4) BS06 CHL ? GO:0009416 ... Q93WE0 31768031
    64 6kad:4 (3.4) BS07 CHL ? GO:0009416 ... Q93WE0 31768031
    65 6kad:4 (3.4) BS08 CHL ? GO:0009416 ... Q93WE0 31768031
    66 6kad:4 (3.4) BS09 CHL ? GO:0009416 ... Q93WE0 31768031
    67 6kad:4 (3.4) BS10 CLA ? GO:0009416 ... Q93WE0 31768031
    68 6kad:4 (3.4) BS11 CLA ? GO:0009416 ... Q93WE0 31768031
    69 6kad:4 (3.4) BS12 CLA ? GO:0009416 ... Q93WE0 31768031
    70 6kad:4 (3.4) BS13 CLA ? GO:0009416 ... Q93WE0 31768031
    71 6kad:4 (3.4) BS14 CLA ? GO:0009416 ... Q93WE0 31768031
    72 6kad:4 (3.4) BS15 CHL ? GO:0009416 ... Q93WE0 31768031
    73 6kad:4 (3.4) BS16 CHL ? GO:0009416 ... Q93WE0 31768031
    74 6kad:5 (3.4) BS01 CHL ? GO:0009416 ... Q93WL4 31768031
    75 6kad:5 (3.4) BS02 CHL ? GO:0009416 ... Q93WL4 31768031
    76 6kad:5 (3.4) BS03 CLA ? GO:0009416 ... Q93WL4 31768031
    77 6kad:5 (3.4) BS04 CLA ? GO:0009416 ... Q93WL4 31768031
    78 6kad:5 (3.4) BS05 CLA ? GO:0009416 ... Q93WL4 31768031
    79 6kad:5 (3.4) BS06 CHL ? GO:0009416 ... Q93WL4 31768031
    80 6kad:5 (3.4) BS07 CHL ? GO:0009416 ... Q93WL4 31768031
    81 6kad:5 (3.4) BS08 CHL ? GO:0009416 ... Q93WL4 31768031
    82 6kad:5 (3.4) BS09 CHL ? GO:0009416 ... Q93WL4 31768031
    83 6kad:5 (3.4) BS10 CHL ? GO:0009416 ... Q93WL4 31768031
    84 6kad:5 (3.4) BS11 CLA ? GO:0009416 ... Q93WL4 31768031
    85 6kad:5 (3.4) BS12 CLA ? GO:0009416 ... Q93WL4 31768031
    86 6kad:5 (3.4) BS13 CLA ? GO:0009416 ... Q93WL4 31768031
    87 6kad:5 (3.4) BS14 CLA ? GO:0009416 ... Q93WL4 31768031
    88 6kad:5 (3.4) BS15 CLA ? GO:0009416 ... Q93WL4 31768031
    89 6kad:6 (3.4) BS01 CHL ? GO:0009416 ... Q93VE0 31768031
    90 6kad:6 (3.4) BS02 CHL ? GO:0009416 ... Q93VE0 31768031
    91 6kad:6 (3.4) BS03 CLA ? GO:0009416 ... Q93VE0 31768031
    92 6kad:6 (3.4) BS04 CLA ? GO:0009416 ... Q93VE0 31768031
    93 6kad:6 (3.4) BS05 CLA ? GO:0009416 ... Q93VE0 31768031
    94 6kad:6 (3.4) BS06 CHL ? GO:0009416 ... Q93VE0 31768031
    95 6kad:6 (3.4) BS07 CHL ? GO:0009416 ... Q93VE0 31768031
    96 6kad:6 (3.4) BS08 CHL ? GO:0009416 ... Q93VE0 31768031
    97 6kad:6 (3.4) BS09 CHL ? GO:0009416 ... Q93VE0 31768031
    98 6kad:6 (3.4) BS10 CHL ? GO:0009416 ... Q93VE0 31768031
    99 6kad:6 (3.4) BS11 CLA ? GO:0009416 ... Q93VE0 31768031
    100 6kad:6 (3.4) BS12 CLA ? GO:0009416 ... Q93VE0 31768031
    101 6kad:6 (3.4) BS13 CLA ? GO:0009416 ... Q93VE0 31768031
    102 6kad:6 (3.4) BS14 CLA ? GO:0009416 ... Q93VE0 31768031
    103 6kad:6 (3.4) BS15 CLA ? GO:0009416 ... Q93VE0 31768031
    104 6kad:7 (3.4) BS01 CHL ? GO:0009416 ... Q93VE0 31768031
    105 6kad:7 (3.4) BS02 CLA ? GO:0009416 ... Q93VE0 31768031
    106 6kad:7 (3.4) BS03 CLA ? GO:0009416 ... Q93VE0 31768031
    107 6kad:7 (3.4) BS04 CLA ? GO:0009416 ... Q93VE0 31768031
    108 6kad:7 (3.4) BS05 CHL ? GO:0009416 ... Q93VE0 31768031
    109 6kad:7 (3.4) BS06 CHL ? GO:0009416 ... Q93VE0 31768031
    110 6kad:7 (3.4) BS07 CHL ? GO:0009416 ... Q93VE0 31768031
    111 6kad:7 (3.4) BS08 CHL ? GO:0009416 ... Q93VE0 31768031
    112 6kad:7 (3.4) BS09 CHL ? GO:0009416 ... Q93VE0 31768031
    113 6kad:7 (3.4) BS10 CLA ? GO:0009416 ... Q93VE0 31768031
    114 6kad:7 (3.4) BS11 CLA ? GO:0009416 ... Q93VE0 31768031
    115 6kad:7 (3.4) BS12 CLA ? GO:0009416 ... Q93VE0 31768031
    116 6kad:7 (3.4) BS13 CLA ? GO:0009416 ... Q93VE0 31768031
    117 6kad:7 (3.4) BS14 CLA ? GO:0009416 ... Q93VE0 31768031
    118 6kad:7 (3.4) BS15 CHL ? GO:0009416 ... Q93VE0 31768031
    119 6kad:8 (3.4) BS01 CHL ? GO:0009416 ... Q93WL4 31768031
    120 6kad:8 (3.4) BS02 CLA ? GO:0009416 ... Q93WL4 31768031
    121 6kad:8 (3.4) BS03 CLA ? GO:0009416 ... Q93WL4 31768031
    122 6kad:8 (3.4) BS04 CHL ? GO:0009416 ... Q93WL4 31768031
    123 6kad:8 (3.4) BS05 CHL ? GO:0009416 ... Q93WL4 31768031
    124 6kad:8 (3.4) BS06 CHL ? GO:0009416 ... Q93WL4 31768031
    125 6kad:8 (3.4) BS07 CHL ? GO:0009416 ... Q93WL4 31768031
    126 6kad:8 (3.4) BS08 CLA ? GO:0009416 ... Q93WL4 31768031
    127 6kad:8 (3.4) BS09 CLA ? GO:0009416 ... Q93WL4 31768031
    128 6kad:8 (3.4) BS10 CLA ? GO:0009416 ... Q93WL4 31768031
    129 6kad:8 (3.4) BS11 CLA ? GO:0009416 ... Q93WL4 31768031
    130 6kad:8 (3.4) BS12 CLA ? GO:0009416 ... Q93WL4 31768031
    131 6kad:8 (3.4) BS13 CHL ? GO:0009416 ... Q93WL4 31768031
    132 6kad:9 (3.4) BS01 CHL ? GO:0009416 ... Q93WL4 31768031
    133 6kad:9 (3.4) BS02 CHL ? GO:0009416 ... Q93WL4 31768031
    134 6kad:9 (3.4) BS03 CHL ? GO:0009416 ... Q93WL4 31768031
    135 6kad:9 (3.4) BS04 CLA ? GO:0009416 ... Q93WL4 31768031
    136 6kad:9 (3.4) BS05 CLA ? GO:0009416 ... Q93WL4 31768031
    137 6kad:9 (3.4) BS06 CHL ? GO:0009416 ... Q93WL4 31768031
    138 6kad:9 (3.4) BS07 CHL ? GO:0009416 ... Q93WL4 31768031
    139 6kad:9 (3.4) BS08 CHL ? GO:0009416 ... Q93WL4 31768031
    140 6kad:9 (3.4) BS09 CHL ? GO:0009416 ... Q93WL4 31768031
    141 6kad:9 (3.4) BS10 CHL ? GO:0009416 ... Q93WL4 31768031
    142 6kad:9 (3.4) BS11 CLA ? GO:0009416 ... Q93WL4 31768031
    143 6kad:9 (3.4) BS12 CLA ? GO:0009416 ... Q93WL4 31768031
    144 6kad:9 (3.4) BS13 CLA ? GO:0009416 ... Q93WL4 31768031
    145 6kad:9 (3.4) BS14 CLA ? GO:0009416 ... Q93WL4 31768031
    146 6kad:9 (3.4) BS15 CLA ? GO:0009416 ... Q93WL4 31768031
    147 6kad:A (3.4) BS01 OEX 1.10.3.9 GO:0005506 ... P07753 31768031
    148 6kad:A (3.4) BS02 FE2 1.10.3.9 GO:0005506 ... P07753 31768031
    149 6kad:A (3.4) BS03 CLA 1.10.3.9 GO:0005506 ... P07753 31768031
    150 6kad:A (3.4) BS04 CLA 1.10.3.9 GO:0005506 ... P07753 31768031
    151 6kad:A (3.4) BS05 CLA 1.10.3.9 GO:0005506 ... P07753 31768031
    152 6kad:A (3.4) BS06 PHO 1.10.3.9 GO:0005506 ... P07753 31768031
    153 6kad:A (3.4) BS07 PHO 1.10.3.9 GO:0005506 ... P07753 31768031
    154 6kad:A (3.4) BS08 CLA 1.10.3.9 GO:0005506 ... P07753 31768031
    155 6kad:A (3.4) BS09 CLA 1.10.3.9 GO:0005506 ... P07753 31768031
    156 6kad:A (3.4) BS10 BCT 1.10.3.9 GO:0005506 ... P07753 31768031
    157 6kad:B (3.4) BS01 CLA ? GO:0009507 ... P37255 31768031
    158 6kad:B (3.4) BS02 CLA ? GO:0009507 ... P37255 31768031
    159 6kad:B (3.4) BS03 CLA ? GO:0009507 ... P37255 31768031
    160 6kad:B (3.4) BS04 CLA ? GO:0009507 ... P37255 31768031
    161 6kad:B (3.4) BS05 CLA ? GO:0009507 ... P37255 31768031
    162 6kad:B (3.4) BS06 CLA ? GO:0009507 ... P37255 31768031
    163 6kad:B (3.4) BS07 CLA ? GO:0009507 ... P37255 31768031
    164 6kad:B (3.4) BS08 CLA ? GO:0009507 ... P37255 31768031
    165 6kad:B (3.4) BS09 CLA ? GO:0009507 ... P37255 31768031
    166 6kad:B (3.4) BS10 CLA ? GO:0009507 ... P37255 31768031
    167 6kad:B (3.4) BS11 CLA ? GO:0009507 ... P37255 31768031
    168 6kad:B (3.4) BS12 CLA ? GO:0009507 ... P37255 31768031
    169 6kad:B (3.4) BS13 CLA ? GO:0009507 ... P37255 31768031
    170 6kad:B (3.4) BS14 CLA ? GO:0009507 ... P37255 31768031
    171 6kad:B (3.4) BS15 CLA ? GO:0009507 ... P37255 31768031
    172 6kad:B (3.4) BS16 CLA ? GO:0009507 ... P37255 31768031
    173 6kad:B (3.4) BS17 CLA ? GO:0009507 ... P37255 31768031
    174 6kad:B (3.4) BS18 CLA ? GO:0009507 ... P37255 31768031
    175 6kad:C (3.4) BS01 OEX ? GO:0005737 ... P10898 31768031
    176 6kad:C (3.4) BS02 CLA ? GO:0005737 ... P10898 31768031
    177 6kad:C (3.4) BS03 CLA ? GO:0005737 ... P10898 31768031
    178 6kad:C (3.4) BS04 CLA ? GO:0005737 ... P10898 31768031
    179 6kad:C (3.4) BS05 CLA ? GO:0005737 ... P10898 31768031
    180 6kad:C (3.4) BS06 CLA ? GO:0005737 ... P10898 31768031
    181 6kad:C (3.4) BS07 CLA ? GO:0005737 ... P10898 31768031
    182 6kad:C (3.4) BS08 CLA ? GO:0005737 ... P10898 31768031
    183 6kad:C (3.4) BS09 CLA ? GO:0005737 ... P10898 31768031
    184 6kad:C (3.4) BS10 CLA ? GO:0005737 ... P10898 31768031
    185 6kad:C (3.4) BS11 CLA ? GO:0005737 ... P10898 31768031
    186 6kad:C (3.4) BS12 CLA ? GO:0005737 ... P10898 31768031
    187 6kad:C (3.4) BS13 CLA ? GO:0005737 ... P10898 31768031
    188 6kad:C (3.4) BS14 CLA ? GO:0005737 ... P10898 31768031
    189 6kad:D (3.4) BS01 FE2 1.10.3.9 GO:0005506 ... P06007 31768031
    190 6kad:D (3.4) BS02 CLA 1.10.3.9 GO:0005506 ... P06007 31768031
    191 6kad:D (3.4) BS03 PHO 1.10.3.9 GO:0005506 ... P06007 31768031
    192 6kad:D (3.4) BS04 PHO 1.10.3.9 GO:0005506 ... P06007 31768031
    193 6kad:D (3.4) BS05 CLA 1.10.3.9 GO:0005506 ... P06007 31768031
    194 6kad:D (3.4) BS06 BCT 1.10.3.9 GO:0005506 ... P06007 31768031
    195 6kad:D (3.4) BS07 CLA 1.10.3.9 GO:0005506 ... P06007 31768031
    196 6kad:D (3.4) BS08 CLA 1.10.3.9 GO:0005506 ... P06007 31768031
    197 6kad:E (3.4) BS01 HEM ? GO:0005506 ... P48268 31768031
    198 6kad:F (3.4) BS01 HEM ? GO:0005506 ... Q08363 31768031
    199 6kad:G (3.4) BS01 CHL ? GO:0009416 ... Q93WE0 31768031
    200 6kad:G (3.4) BS02 CLA ? GO:0009416 ... Q93WE0 31768031
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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