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BioLiP
Download all results in tab-seperated text for 28 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6jiy:A (3.9) BS01 ZN N/A GO:0005216 ... N/A 31278385
    2 6jiy:A (3.9) BS02 CA N/A GO:0005216 ... N/A 31278385
    3 6jiy:A (3.9) BS03 ATP N/A GO:0005216 ... N/A 31278385
    4 6jiy:A (3.9) BS04 CFF N/A GO:0005216 ... N/A 31278385
    5 6jiy:C (3.9) BS01 CA ? GO:0000086 ... P0DP23 31278385
    6 6jiy:C (3.9) BS02 CA ? GO:0000086 ... P0DP23 31278385
    7 6jiy:C (3.9) BS03 CA ? GO:0000086 ... P0DP23 31278385
    8 6jiy:D (3.9) BS01 ZN N/A GO:0005216 ... N/A 31278385
    9 6jiy:D (3.9) BS02 CA N/A GO:0005216 ... N/A 31278385
    10 6jiy:D (3.9) BS03 ATP N/A GO:0005216 ... N/A 31278385
    11 6jiy:D (3.9) BS04 CFF N/A GO:0005216 ... N/A 31278385
    12 6jiy:F (3.9) BS01 CA ? GO:0000086 ... P0DP23 31278385
    13 6jiy:F (3.9) BS02 CA ? GO:0000086 ... P0DP23 31278385
    14 6jiy:F (3.9) BS03 CA ? GO:0000086 ... P0DP23 31278385
    15 6jiy:G (3.9) BS01 ZN N/A GO:0005216 ... N/A 31278385
    16 6jiy:G (3.9) BS02 CA N/A GO:0005216 ... N/A 31278385
    17 6jiy:G (3.9) BS03 ATP N/A GO:0005216 ... N/A 31278385
    18 6jiy:G (3.9) BS04 CFF N/A GO:0005216 ... N/A 31278385
    19 6jiy:I (3.9) BS01 CA ? GO:0000086 ... P0DP23 31278385
    20 6jiy:I (3.9) BS02 CA ? GO:0000086 ... P0DP23 31278385
    21 6jiy:I (3.9) BS03 CA ? GO:0000086 ... P0DP23 31278385
    22 6jiy:J (3.9) BS01 ZN N/A GO:0005216 ... N/A 31278385
    23 6jiy:J (3.9) BS02 CA N/A GO:0005216 ... N/A 31278385
    24 6jiy:J (3.9) BS03 ATP N/A GO:0005216 ... N/A 31278385
    25 6jiy:J (3.9) BS04 CFF N/A GO:0005216 ... N/A 31278385
    26 6jiy:L (3.9) BS01 CA ? GO:0000086 ... P0DP23 31278385
    27 6jiy:L (3.9) BS02 CA ? GO:0000086 ... P0DP23 31278385
    28 6jiy:L (3.9) BS03 CA ? GO:0000086 ... P0DP23 31278385
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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