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BioLiP
Download all results in tab-seperated text for 51 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6i9r:0 (3.9) BS01 rna ? GO:0003723 ... Q9BYC8 33910005
    2 6i9r:0 (3.9) BS02 ZN ? GO:0003723 ... Q9BYC8 33910005
    3 6i9r:1 (3.9) BS01 rna ? GO:0003735 ... O75394 33910005
    4 6i9r:2 (3.9) BS01 rna ? GO:0003735 ... Q9BQ48 33910005
    5 6i9r:3 (3.9) BS01 rna ? GO:0003735 ... Q9NZE8 33910005
    6 6i9r:4 (3.9) BS01 rna ? GO:0003735 ... Q9P0J6 33910005
    7 6i9r:4 (3.9) BS02 ZN ? GO:0003735 ... Q9P0J6 33910005
    8 6i9r:5 (3.9) BS01 rna ? GO:0003723 ... Q9BZE1 33910005
    9 6i9r:6 (3.9) BS01 rna ? GO:0005515 ... Q96DV4 33910005
    10 6i9r:6 (3.9) BS02 rna ? GO:0005515 ... Q96DV4 33910005
    11 6i9r:8 (3.9) BS01 rna ? GO:0003723 ... Q9NQ50 33910005
    12 6i9r:9 (3.9) BS01 rna ? GO:0003723 ... Q8IXM3 33910005
    13 6i9r:D (3.9) BS01 rna ? GO:0003723 ... Q5T653 33910005
    14 6i9r:E (3.9) BS01 rna ? GO:0003723 ... P09001 33910005
    15 6i9r:F (3.9) BS01 rna ? GO:0003723 ... Q9BYD3 33910005
    16 6i9r:H (3.9) BS01 rna ? GO:0003723 ... Q9BYD2 33910005
    17 6i9r:I (3.9) BS01 rna ? GO:0003723 ... Q7Z7H8 33910005
    18 6i9r:J (3.9) BS01 rna ? GO:0003723 ... Q9Y3B7 33910005
    19 6i9r:K (3.9) BS01 rna ? GO:0003723 ... Q9BYD1 33910005
    20 6i9r:L (3.9) BS01 rna ? GO:0003723 ... Q6P1L8 33910005
    21 6i9r:M (3.9) BS01 rna ? GO:0003723 ... Q9P015 33910005
    22 6i9r:N (3.9) BS01 rna ? GO:0003735 ... Q9NX20 33910005
    23 6i9r:O (3.9) BS01 rna ? GO:0003735 ... Q9NRX2 33910005
    24 6i9r:P (3.9) BS01 rna ? GO:0003735 ... A8K9D2 33910005
    25 6i9r:P (3.9) BS02 rna ? GO:0003735 ... A8K9D2 33910005
    26 6i9r:Q (3.9) BS01 rna ? GO:0003735 ... P49406 33910005
    27 6i9r:R (3.9) BS01 rna ? GO:0003723 ... Q9BYC9 33910005
    28 6i9r:S (3.9) BS01 rna ? GO:0003723 ... Q7Z2W9 33910005
    29 6i9r:T (3.9) BS01 rna ? GO:0003735 ... E7ESL0 33910005
    30 6i9r:T (3.9) BS02 G ? GO:0003735 ... E7ESL0 33910005
    31 6i9r:U (3.9) BS01 rna ? GO:0001650 ... Q16540 33910005
    32 6i9r:V (3.9) BS01 rna ? GO:0003723 ... Q96A35 33910005
    33 6i9r:W (3.9) BS01 rna ? GO:0003723 ... Q9P0M9 33910005
    34 6i9r:X (3.9) BS01 rna ? GO:0003723 ... Q13084 33910005
    35 6i9r:Y (3.9) BS01 rna ? GO:0003674 ... Q9HD33 33910005
    36 6i9r:Z (3.9) BS01 rna ? GO:0003735 ... Q8TCC3 33910005
    37 6i9r:a (3.9) BS01 rna ? GO:0003723 ... Q9Y6G3 33910005
    38 6i9r:b (3.9) BS01 rna ? GO:0003723 ... Q8N983 33910005
    39 6i9r:c (3.9) BS01 rna 3.1.26.- GO:0003723 ... Q9H9J2 33910005
    40 6i9r:d (3.9) BS01 rna ? GO:0003723 ... Q9BRJ2 33910005
    41 6i9r:f (3.9) BS01 rna ? GO:0005515 ... Q96GC5 33910005
    42 6i9r:f (3.9) BS02 rna ? GO:0005515 ... Q96GC5 33910005
    43 6i9r:g (3.9) BS01 rna ? GO:0003735 ... Q13405 33910005
    44 6i9r:i (3.9) BS01 rna ? GO:0003735 ... Q4U2R6 33910005
    45 6i9r:j (3.9) BS01 rna ? GO:0003735 ... A8K7J6 33910005
    46 6i9r:l (3.9) BS01 rna ? GO:0003723 ... Q6P161 33910005
    47 6i9r:m (3.9) BS01 rna ? GO:0003735 ... Q7Z7F7 33910005
    48 6i9r:o (3.9) BS01 rna ? GO:0003735 ... Q9BQC6 33910005
    49 6i9r:q (3.9) BS01 rna ? GO:0005515 ... Q8TAE8 33910005
    50 6i9r:r (3.9) BS01 rna ? GO:0003735 ... Q9NVS2 33910005
    51 6i9r:s (3.9) BS01 rna ? GO:0003723 ... Q9NP92 33910005
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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