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BioLiP
Download all results in tab-seperated text for 35 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6g18:A (3.6) BS01 rna ? GO:0000028 ... P08865 29875412
    2 6g18:B (3.6) BS01 rna ? GO:0002181 ... P61247 29875412
    3 6g18:C (3.6) BS01 rna ? GO:0002181 ... P15880 29875412
    4 6g18:E (3.6) BS01 rna ? GO:0002181 ... P62701 29875412
    5 6g18:F (3.6) BS01 rna ? GO:0000028 ... P46782 29875412
    6 6g18:G (3.6) BS01 rna ? GO:0000082 ... P62753 29875412
    7 6g18:H (3.6) BS01 rna ? GO:0001843 ... P62081 29875412
    8 6g18:I (3.6) BS01 rna ? GO:0000462 ... P62241 29875412
    9 6g18:J (3.6) BS01 rna ? GO:0002181 ... P46781 29875412
    10 6g18:L (3.6) BS01 rna ? GO:0002181 ... P62280 29875412
    11 6g18:M (3.6) BS01 rna ? GO:0002181 ... P25398 29875412
    12 6g18:N (3.6) BS01 rna ? GO:0002181 ... P62277 29875412
    13 6g18:O (3.6) BS01 rna ? GO:0000028 ... P62263 29875412
    14 6g18:P (3.6) BS01 rna ? GO:0000028 ... P62841 29875412
    15 6g18:Q (3.6) BS01 rna ? GO:0000462 ... P62249 29875412
    16 6g18:R (3.6) BS01 rna ? GO:0002181 ... P08708 29875412
    17 6g18:S (3.6) BS01 rna ? GO:0002181 ... P62269 29875412
    18 6g18:T (3.6) BS01 rna ? GO:0000028 ... P39019 29875412
    19 6g18:W (3.6) BS01 rna ? GO:0002181 ... P62244 29875412
    20 6g18:X (3.6) BS01 rna ? GO:0002181 ... P62266 29875412
    21 6g18:Y (3.6) BS01 rna ? GO:0002181 ... P62847 29875412
    22 6g18:Z (3.6) BS01 rna ? GO:0002181 ... P62851 29875412
    23 6g18:b (3.6) BS01 rna ? GO:0000028 ... P42677 29875412
    24 6g18:c (3.6) BS01 rna ? GO:0000028 ... P62857 29875412
    25 6g18:e (3.6) BS01 rna ? GO:0003735 ... P62861 29875412
    26 6g18:f (3.6) BS01 rna ? GO:0002181 ... P62979 29875412
    27 6g18:f (3.6) BS02 ZN ? GO:0002181 ... P62979 29875412
    28 6g18:g (3.6) BS01 rna ? GO:0001891 ... P63244 29875412
    29 6g18:t (3.6) BS01 rna ? GO:0000056 ... Q96GA3 29875412
    30 6g18:u (3.6) BS01 rna ? GO:0000462 ... Q2NL82 29875412
    31 6g18:v (3.6) BS01 rna 2.7.11.1 GO:0004672 ... Q9BVS4 29875412
    32 6g18:w (3.6) BS01 rna ? GO:0000462 ... Q13895 29875412
    33 6g18:x (3.6) BS01 rna ? GO:0003676 ... Q9NRX1 29875412
    34 6g18:y (3.6) BS01 rna 3.1.-.- GO:0004519 ... Q9ULX3 29875412
    35 6g18:y (3.6) BS02 ZN 3.1.-.- GO:0004519 ... Q9ULX3 29875412
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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