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BioLiP
Download all results in tab-seperated text for 53 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6fyy:A (3.02) BS01 rna ? GO:0000028 ... Q6CN12 30475211
    2 6fyy:B (3.02) BS01 rna ? GO:0003735 ... Q6CWD0 30475211
    3 6fyy:C (3.02) BS01 rna ? GO:0003723 ... Q6CKL3 30475211
    4 6fyy:D (3.02) BS01 rna ? GO:0003723 ... Q6CRK7 30475211
    5 6fyy:D (3.02) BS02 rna ? GO:0003723 ... Q6CRK7 30475211
    6 6fyy:E (3.02) BS01 rna ? GO:0003723 ... Q6CWJ2 30475211
    7 6fyy:F (3.02) BS01 rna ? GO:0000028 ... Q6CRA3 30475211
    8 6fyy:F (3.02) BS02 rna ? GO:0000028 ... Q6CRA3 30475211
    9 6fyy:G (3.02) BS01 rna ? GO:0003735 ... Q6CM04 30475211
    10 6fyy:H (3.02) BS01 rna ? GO:0003735 ... Q6CTD6 30475211
    11 6fyy:I (3.02) BS01 rna ? GO:0000462 ... Q6CMG3 30475211
    12 6fyy:J (3.02) BS01 rna ? GO:0003723 ... Q6CM18 30475211
    13 6fyy:K (3.02) BS01 rna ? GO:0003723 ... Q6CVZ5 30475211
    14 6fyy:L (3.02) BS01 rna ? GO:0003735 ... Q6CX80 30475211
    15 6fyy:M (3.02) BS01 rna ? GO:0003735 ... Q6CLU4 30475211
    16 6fyy:N (3.02) BS01 rna ? GO:0003735 ... Q6CJK0 30475211
    17 6fyy:O (3.02) BS01 rna ? GO:0000028 ... P27069 30475211
    18 6fyy:P (3.02) BS01 rna ? GO:0000028 ... Q6CKV4 30475211
    19 6fyy:Q (3.02) BS01 rna ? GO:0000462 ... Q875N2 30475211
    20 6fyy:R (3.02) BS01 rna ? GO:0003735 ... Q6CWU3 30475211
    21 6fyy:S (3.02) BS01 rna ? GO:0003676 ... Q6CWT9 30475211
    22 6fyy:T (3.02) BS01 rna ? GO:0000028 ... Q6CXM0 30475211
    23 6fyy:U (3.02) BS01 rna ? GO:0003735 ... Q6CIM1 30475211
    24 6fyy:V (3.02) BS01 rna ? GO:0000447 ... Q6CXT6 30475211
    25 6fyy:W (3.02) BS01 rna ? GO:0003735 ... Q6CW21 30475211
    26 6fyy:X (3.02) BS01 rna ? GO:0003735 ... F2Z602 30475211
    27 6fyy:Y (3.02) BS01 rna ? GO:0003735 ... Q6CU44 30475211
    28 6fyy:Z (3.02) BS01 rna ? GO:0003735 ... Q6CW78 30475211
    29 6fyy:a (3.02) BS01 rna ? GO:0003729 ... Q6CS01 30475211
    30 6fyy:a (3.02) BS02 rna ? GO:0003729 ... Q6CS01 30475211
    31 6fyy:a (3.02) BS03 ZN ? GO:0003729 ... Q6CS01 30475211
    32 6fyy:b (3.02) BS01 rna ? GO:0000028 ... Q6CNL2 30475211
    33 6fyy:b (3.02) BS02 ZN ? GO:0000028 ... Q6CNL2 30475211
    34 6fyy:c (3.02) BS01 rna ? GO:0000028 ... P33285 30475211
    35 6fyy:c (3.02) BS02 rna ? GO:0000028 ... P33285 30475211
    36 6fyy:d (3.02) BS01 rna ? GO:0003735 ... Q6CPG3 30475211
    37 6fyy:e (3.02) BS01 rna ? GO:0003735 ... Q6CUH5 30475211
    38 6fyy:f (3.02) BS01 rna ? GO:0003735 ... P69061 30475211
    39 6fyy:g (3.02) BS01 rna ? GO:0001934 ... Q6CNI7 30475211
    40 6fyy:i (3.02) BS01 rna ? GO:0001677 ... P38912 30475211
    41 6fyy:i (3.02) BS02 rna ? GO:0001677 ... P38912 30475211
    42 6fyy:j (3.02) BS01 rna ? GO:0001731 ... P20459 30475211
    43 6fyy:j (3.02) BS02 rna ? GO:0001731 ... P20459 30475211
    44 6fyy:k (3.02) BS01 rna 3.6.5.3 GO:0000049 ... P32481 30475211
    45 6fyy:k (3.02) BS02 MET 3.6.5.3 GO:0000049 ... P32481 30475211
    46 6fyy:l (3.02) BS01 rna ? GO:0001731 ... P09064 30475211
    47 6fyy:l (3.02) BS02 ZN ? GO:0001731 ... P09064 30475211
    48 6fyy:m (3.02) BS01 rna ? GO:0001732 ... P38431 30475211
    49 6fyy:m (3.02) BS02 rna ? GO:0001732 ... P38431 30475211
    50 6fyy:o (3.02) BS01 rna ? GO:0000131 ... P38249 30475211
    51 6fyy:o (3.02) BS02 rna ? GO:0000131 ... P38249 30475211
    52 6fyy:p (3.02) BS01 rna ? GO:0001732 ... P06103 30475211
    53 6fyy:q (3.02) BS01 rna ? GO:0003723 ... P32497 30475211
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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