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BioLiP
Download all results in tab-seperated text for 67 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6ftg:5 (9.1) BS01 9UB 2.4.99.18 GO:0004576 ... F1PJP5 29519914
    2 6ftg:A (9.1) BS01 rna ? GO:0002181 ... G1TT27 29519914
    3 6ftg:B (9.1) BS01 rna ? GO:0003723 ... G1TL06 29519914
    4 6ftg:C (9.1) BS01 rna ? GO:0003735 ... G1SVW5 29519914
    5 6ftg:C (9.1) BS02 rna ? GO:0003735 ... G1SVW5 29519914
    6 6ftg:D (9.1) BS01 rna ? GO:0000027 ... P19949 29519914
    7 6ftg:D (9.1) BS02 rna ? GO:0000027 ... P19949 29519914
    8 6ftg:E (9.1) BS01 rna ? GO:0003735 ... G1TG04 29519914
    9 6ftg:F (9.1) BS01 rna ? GO:0000463 ... G1SV32 29519914
    10 6ftg:F (9.1) BS02 rna ? GO:0000463 ... G1SV32 29519914
    11 6ftg:G (9.1) BS01 rna ? GO:0042254 ... G1STW0 29519914
    12 6ftg:G (9.1) BS02 rna ? GO:0042254 ... G1STW0 29519914
    13 6ftg:H (9.1) BS01 rna ? GO:0002181 ... G1SWI6 29519914
    14 6ftg:I (9.1) BS01 rna ? GO:0000027 ... B7NZQ2 29519914
    15 6ftg:I (9.1) BS02 rna ? GO:0000027 ... B7NZQ2 29519914
    16 6ftg:J (9.1) BS01 rna ? GO:0003723 ... G1TUB8 29519914
    17 6ftg:J (9.1) BS02 rna ? GO:0003723 ... G1TUB8 29519914
    18 6ftg:L (9.1) BS01 rna N/A GO:0003735 ... N/A 29519914
    19 6ftg:L (9.1) BS02 rna N/A GO:0003735 ... N/A 29519914
    20 6ftg:M (9.1) BS01 rna ? GO:0003723 ... G1SZ12 29519914
    21 6ftg:N (9.1) BS01 rna ? GO:0002181 ... G1T0C1 29519914
    22 6ftg:N (9.1) BS02 rna ? GO:0002181 ... G1T0C1 29519914
    23 6ftg:O (9.1) BS01 rna N/A GO:0003735 ... N/A 29519914
    24 6ftg:P (9.1) BS01 rna ? GO:0003735 ... G1SCJ6 29519914
    25 6ftg:P (9.1) BS02 rna ? GO:0003735 ... G1SCJ6 29519914
    26 6ftg:Q (9.1) BS01 rna N/A GO:0003735 ... N/A 29519914
    27 6ftg:R (9.1) BS01 rna N/A GO:0003723 ... N/A 29519914
    28 6ftg:S (9.1) BS01 rna N/A GO:0003735 ... N/A 29519914
    29 6ftg:S (9.1) BS02 rna N/A GO:0003735 ... N/A 29519914
    30 6ftg:T (9.1) BS01 rna ? GO:0003735 ... G1SHQ2 29519914
    31 6ftg:T (9.1) BS02 rna ? GO:0003735 ... G1SHQ2 29519914
    32 6ftg:U (9.1) BS01 rna N/A GO:0003735 ... N/A 29519914
    33 6ftg:V (9.1) BS01 rna ? GO:0000122 ... G1T6D1 29519914
    34 6ftg:W (9.1) BS01 rna ? N/A G1SE28 29519914
    35 6ftg:X (9.1) BS01 rna ? GO:0003735 ... G1SE76 29519914
    36 6ftg:X (9.1) BS02 rna ? GO:0003735 ... G1SE76 29519914
    37 6ftg:Y (9.1) BS01 rna ? GO:0002181 ... G1SQH0 29519914
    38 6ftg:Y (9.1) BS02 rna ? GO:0002181 ... G1SQH0 29519914
    39 6ftg:Z (9.1) BS01 rna ? GO:0003735 ... G1TXF6 29519914
    40 6ftg:a (9.1) BS01 rna ? GO:0003735 ... G1SNY0 29519914
    41 6ftg:b (9.1) BS01 rna ? GO:0003735 ... G1SGR6 29519914
    42 6ftg:c (9.1) BS01 rna N/A GO:0003723 ... N/A 29519914
    43 6ftg:d (9.1) BS01 rna ? GO:0003735 ... G1SHG0 29519914
    44 6ftg:e (9.1) BS01 rna ? GO:0003735 ... G1TUN8 29519914
    45 6ftg:f (9.1) BS01 rna ? GO:0000049 ... G1SF08 29519914
    46 6ftg:g (9.1) BS01 rna ? GO:0003735 ... G1TXG5 29519914
    47 6ftg:g (9.1) BS02 ZN ? GO:0003735 ... G1TXG5 29519914
    48 6ftg:h (9.1) BS01 rna ? GO:0000463 ... G1SIT5 29519914
    49 6ftg:h (9.1) BS02 rna ? GO:0000463 ... G1SIT5 29519914
    50 6ftg:i (9.1) BS01 rna ? GO:0002181 ... G1TTQ5 29519914
    51 6ftg:j (9.1) BS01 rna ? GO:0003735 ... U3KPD5 29519914
    52 6ftg:j (9.1) BS02 rna ? GO:0003735 ... U3KPD5 29519914
    53 6ftg:j (9.1) BS03 ZN ? GO:0003735 ... U3KPD5 29519914
    54 6ftg:k (9.1) BS01 rna N/A GO:0003735 ... N/A 29519914
    55 6ftg:l (9.1) BS01 rna ? GO:0003735 ... G1SYU7 29519914
    56 6ftg:l (9.1) BS02 rna ? GO:0003735 ... G1SYU7 29519914
    57 6ftg:m (9.1) BS01 rna N/A GO:0003735 ... N/A 29519914
    58 6ftg:m (9.1) BS02 ZN N/A GO:0003735 ... N/A 29519914
    59 6ftg:o (9.1) BS01 rna ? GO:0003735 ... G1T040 29519914
    60 6ftg:o (9.1) BS02 ZN ? GO:0003735 ... G1T040 29519914
    61 6ftg:p (9.1) BS01 rna ? GO:0003735 ... G1SY53 29519914
    62 6ftg:p (9.1) BS02 ZN ? GO:0003735 ... G1SY53 29519914
    63 6ftg:r (9.1) BS01 rna ? GO:0003735 ... G1U7L1 29519914
    64 6ftg:s (9.1) BS01 rna N/A N/A N/A 29519914
    65 6ftg:t (9.1) BS01 rna ? GO:0003723 ... G1SMR7 29519914
    66 6ftg:x (9.1) BS01 rna ? GO:0005048 ... P38377 29519914
    67 6ftg:x (9.1) BS02 peptide ? GO:0005048 ... P38377 29519914
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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