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BioLiP
Download all results in tab-seperated text for 79 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6frk:3 (3.7) BS01 rna N/A GO:0003735 ... N/A 29567807
    2 6frk:4 (3.7) BS01 rna N/A GO:0003735 ... N/A 29567807
    3 6frk:4 (3.7) BS02 rna N/A GO:0003735 ... N/A 29567807
    4 6frk:6 (3.7) BS01 rna N/A N/A N/A 29567807
    5 6frk:A (3.7) BS01 rna N/A GO:0003735 ... N/A 29567807
    6 6frk:B (3.7) BS01 rna N/A GO:0003735 ... N/A 29567807
    7 6frk:C (3.7) BS01 rna N/A GO:0003735 ... N/A 29567807
    8 6frk:C (3.7) BS02 rna N/A GO:0003735 ... N/A 29567807
    9 6frk:D (3.7) BS01 rna N/A GO:0003735 ... N/A 29567807
    10 6frk:D (3.7) BS02 rna N/A GO:0003735 ... N/A 29567807
    11 6frk:E (3.7) BS01 rna N/A GO:0003735 ... N/A 29567807
    12 6frk:F (3.7) BS01 rna N/A GO:0000463 ... N/A 29567807
    13 6frk:F (3.7) BS02 rna N/A GO:0000463 ... N/A 29567807
    14 6frk:G (3.7) BS01 rna N/A GO:0042254 ... N/A 29567807
    15 6frk:G (3.7) BS02 rna N/A GO:0042254 ... N/A 29567807
    16 6frk:H (3.7) BS01 rna N/A GO:0003735 ... N/A 29567807
    17 6frk:I (3.7) BS01 rna N/A GO:0003735 ... N/A 29567807
    18 6frk:I (3.7) BS02 rna N/A GO:0003735 ... N/A 29567807
    19 6frk:I (3.7) BS03 rna N/A GO:0003735 ... N/A 29567807
    20 6frk:J (3.7) BS01 rna N/A GO:0003735 ... N/A 29567807
    21 6frk:J (3.7) BS02 rna N/A GO:0003735 ... N/A 29567807
    22 6frk:J (3.7) BS03 rna N/A GO:0003735 ... N/A 29567807
    23 6frk:L (3.7) BS01 rna N/A GO:0003735 ... N/A 29567807
    24 6frk:L (3.7) BS02 rna N/A GO:0003735 ... N/A 29567807
    25 6frk:M (3.7) BS01 rna N/A GO:0003723 ... N/A 29567807
    26 6frk:N (3.7) BS01 rna N/A GO:0003735 ... N/A 29567807
    27 6frk:N (3.7) BS02 rna N/A GO:0003735 ... N/A 29567807
    28 6frk:O (3.7) BS01 rna N/A GO:0003735 ... N/A 29567807
    29 6frk:P (3.7) BS01 rna N/A GO:0003735 ... N/A 29567807
    30 6frk:P (3.7) BS02 rna N/A GO:0003735 ... N/A 29567807
    31 6frk:Q (3.7) BS01 rna N/A GO:0003735 ... N/A 29567807
    32 6frk:R (3.7) BS01 rna N/A GO:0003723 ... N/A 29567807
    33 6frk:S (3.7) BS01 rna N/A GO:0003735 ... N/A 29567807
    34 6frk:S (3.7) BS02 rna N/A GO:0003735 ... N/A 29567807
    35 6frk:T (3.7) BS01 rna N/A GO:0003735 ... N/A 29567807
    36 6frk:T (3.7) BS02 rna N/A GO:0003735 ... N/A 29567807
    37 6frk:U (3.7) BS01 rna N/A GO:0003735 ... N/A 29567807
    38 6frk:V (3.7) BS01 rna N/A GO:0003735 ... N/A 29567807
    39 6frk:W (3.7) BS01 rna N/A N/A N/A 29567807
    40 6frk:X (3.7) BS01 rna N/A GO:0003735 ... N/A 29567807
    41 6frk:X (3.7) BS02 rna N/A GO:0003735 ... N/A 29567807
    42 6frk:Y (3.7) BS01 rna N/A GO:0003723 ... N/A 29567807
    43 6frk:Y (3.7) BS02 rna N/A GO:0003723 ... N/A 29567807
    44 6frk:Z (3.7) BS01 rna N/A GO:0003735 ... N/A 29567807
    45 6frk:a (3.7) BS01 rna N/A GO:0003735 ... N/A 29567807
    46 6frk:b (3.7) BS01 rna N/A GO:0003735 ... N/A 29567807
    47 6frk:c (3.7) BS01 rna N/A GO:0003723 ... N/A 29567807
    48 6frk:d (3.7) BS01 rna N/A GO:0003735 ... N/A 29567807
    49 6frk:e (3.7) BS01 rna N/A GO:0003735 ... N/A 29567807
    50 6frk:f (3.7) BS01 rna N/A GO:0003735 ... N/A 29567807
    51 6frk:g (3.7) BS01 rna N/A GO:0003735 ... N/A 29567807
    52 6frk:h (3.7) BS01 rna N/A GO:0000463 ... N/A 29567807
    53 6frk:h (3.7) BS02 rna N/A GO:0000463 ... N/A 29567807
    54 6frk:i (3.7) BS01 rna N/A GO:0003735 ... N/A 29567807
    55 6frk:j (3.7) BS01 rna N/A GO:0003735 ... N/A 29567807
    56 6frk:j (3.7) BS02 rna N/A GO:0003735 ... N/A 29567807
    57 6frk:j (3.7) BS03 ZN N/A GO:0003735 ... N/A 29567807
    58 6frk:k (3.7) BS01 rna N/A GO:0003735 ... N/A 29567807
    59 6frk:l (3.7) BS01 rna N/A GO:0003735 ... N/A 29567807
    60 6frk:l (3.7) BS02 rna N/A GO:0003735 ... N/A 29567807
    61 6frk:m (3.7) BS01 rna N/A GO:0003735 ... N/A 29567807
    62 6frk:m (3.7) BS02 ZN N/A GO:0003735 ... N/A 29567807
    63 6frk:o (3.7) BS01 rna N/A GO:0003735 ... N/A 29567807
    64 6frk:o (3.7) BS02 rna N/A GO:0003735 ... N/A 29567807
    65 6frk:p (3.7) BS01 rna N/A GO:0003735 ... N/A 29567807
    66 6frk:q (3.7) BS01 rna ? GO:0006614 ... J9PAS6 29567807
    67 6frk:r (3.7) BS01 rna ? GO:0006614 ... P33731 29567807
    68 6frk:u (3.7) BS01 rna ? GO:0003723 ... Q00004 29567807
    69 6frk:v (3.7) BS01 MG ? GO:0005525 ... G1STG2 29567807
    70 6frk:v (3.7) BS02 GTP ? GO:0005525 ... G1STG2 29567807
    71 6frk:w (3.7) BS01 rna ? GO:0006614 ... P21262 29567807
    72 6frk:x (3.7) BS01 rna 3.6.5.4 GO:0003723 ... P61010 29567807
    73 6frk:x (3.7) BS02 peptide 3.6.5.4 GO:0003723 ... P61010 29567807
    74 6frk:x (3.7) BS03 GNP 3.6.5.4 GO:0003723 ... P61010 29567807
    75 6frk:x (3.7) BS04 MG 3.6.5.4 GO:0003723 ... P61010 29567807
    76 6frk:y (3.7) BS01 rna ? GO:0003924 ... G1TCX6 29567807
    77 6frk:y (3.7) BS02 GNP ? GO:0003924 ... G1TCX6 29567807
    78 6frk:y (3.7) BS03 GNP ? GO:0003924 ... G1TCX6 29567807
    79 6frk:z (3.7) BS01 rna ? GO:0003723 ... P16255 29567807
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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